Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00770 ATGAAGAAAAAAAAGAAACAAATTAATACAAATTCATGTTCTGTTTCTGTTTCTCCATCTTCATCTTCTTCTTCATCTTCTCTTAAACCAAACAAACGTAGAAACAGAACAAAACGAAAAAAACCAAAGTATCTTAGTCTCAGATTACAGCTTTCACAACAAACACAAAAAACCCAACAACCCAAAAAAACCAACAACAAAAAGCAACAACAAGAACCACAATTGAATCATCATCATGTTTACAATGATCTTCAAACAGAACAAGACATGCAAGAAGAAAACAACGTGGCTTTACTCTTCACATCTGACGGTGGAGCAACATTAAACGGATTACTAGAAGATGAATCAACGACATTAACAGCGGCGACGACGACGGAGGAAGAGGAAGAGTCTTTATCAGTGATGAGGTGTCCAGAGATGGAAGGGTTAGTGAAGAAAGCGATGAGGAAGAGAAATGATGAAGAAGAGAGTGAAGAAAGATGGGTTAGTTATTCAGAAGTTGTTGAAGAGAAAAAGGAAATGATGGAAGAAGTTAATAGTTGTGTTGTTGGGATTGAAACGATGTCGTTTTTTGGATCTTTGTCTTTGAAACTTGATCATGATGGGATATTGAATGCTTGGTCTGATAAAGGTTCTCTTTATGTTGTTGATGGTTGTGATGAGTCACCACAGACTGTTCCTGATTTGTTCAATGCTTCCTCCATCTTTCCCAATGGATATGGTTATGGGGGTGATGTTAATGCGAACACATGGAAAGTTCCTGATGGCGTTGGAGCTAGCAATAATAATGTGAAGGTGAAGGAAGAAATGGGTTGGAAGCTTGGTCAAAGAGAGGCGAGTTTGTTGAGATACAAAGAAAAGAGACAAAGTAGACTCTTCGCTAAGAGGATCCGTTATGAAGTGCGCAAGTTGAATGCCGAAAAACGGCCTAGAATGAAGGGACGATTTGTGAAGAGGGAATGA 963 0.3853 MKKKKKQINTNSCSVSVSPSSSSSSSSLKPNKRRNRTKRKKPKYLSLRLQLSQQTQKTQQPKKTNNKKQQQEPQLNHHHVYNDLQTEQDMQEENNVALLFTSDGGATLNGLLEDESTTLTAATTTEEEEESLSVMRCPEMEGLVKKAMRKRNDEEESEERWVSYSEVVEEKKEMMEEVNSCVVGIETMSFFGSLSLKLDHDGILNAWSDKGSLYVVDGCDESPQTVPDLFNASSIFPNGYGYGGDVNANTWKVPDGVGASNNNVKVKEEMGWKLGQREASLLRYKEKRQSRLFAKRIRYEVRKLNAEKRPRMKGRFVKRE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00770 320 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 8 320 - -
Trre13g00770 320 MobiDBLite consensus disorder prediction 8 30 - -
Trre13g00770 320 Pfam CCT motif 277 319 IPR010402 GO:0005515
Trre13g00770 320 ProSiteProfiles CCT domain profile. 277 319 IPR010402 GO:0005515
Trre13g00770 320 MobiDBLite consensus disorder prediction 31 45 - -
Trre13g00770 320 MobiDBLite consensus disorder prediction 1 76 - -
Trre13g00770 320 MobiDBLite consensus disorder prediction 47 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00770 Trre-Chr13 5931204 5934669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00770 171 319 C2C2-CO-like Transcription Factor Family AT1G25440 38.961 8.65e-20 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre13g00770 CCT 4.1e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00770 - - psat:127128050 379.407