Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00769 ATGTGCAACAAAAATAGTACTACTACTCTTTCTACAATAAAAACAAGATCAGTTACTATGAAGAAAAAAAAGAAACAAATTAATACAAATTCATGTTCTGTTTCTGTTTCTCCATCTTCATCTTCTTCTTCATCTTCTCTTAAACCAAACAAACGTAGAAACAGAACAAAACGAAAAAAACCAAAGTATCTTAGTCTCAGATTACAGCTTTCACAACAAACACAAAAAACCCAACAACCCAAAAAAACCAACAACAAAAAGCAACAACAAGAACCACAATTGAATCATCATCATGTTTACAATGATCTTCAAACAGAACAAGACATGCAAGAAGAAAACAACGTGGCTTTACTCTTCACATCTGACGGTGGAGCAACATTAAACGGATTACTAGAAGATGAATCAACGACATTAACAGCGGCGACGACGACGGAGGAAGAGGAAGAGTCTTTATCAGTGATGAGGTGTCCAGAGATGGAAGGGTTAGTGAAGAAAGCGATGAGGAAGAGAAATGATGAAGAAGAGAGTGAAGAAAGATGGGTTAGTTATTCAGAAGTTGTTGAAGAGAAAAAGGAAATGATGGAAGAAGTTAATAGTTGTGTTGTTGGGATTGAAACGATGTCGTTTTTTGGATCTTTGTCTTTGAAACTTGATCATGATGGGATATTGAATGCTTGGTCTGATAAAGGTTCTCTTTATGTTGTTGATGGTTGTGATGAGTCACCACAGACTGTTCCTGATTTGTTCAATGCTTCCTCCATCTTTCCCAATGGATATGGTTATGGGGGTGATGTTAATGCGAACACATGGAAAGTTCCTGATGGCGTTGGAGCTAGCAATAATAATGTGAAGGTGAAGGAAGAAATGGGTTGGAAGCTTGGTCAAAGAGAGGCGAGTTTGTTGAGATACAAAGAAAAGAGACAAAGTAGACTCTTCGCTAAGAGGATCCGTTATGAAGTGCGCAAGTTGAATGCCGAAAAACGGCCTAGAATGAAGGGACGATTTGTGAAGAGGGAATGA 1020 0.3794 MCNKNSTTTLSTIKTRSVTMKKKKKQINTNSCSVSVSPSSSSSSSSLKPNKRRNRTKRKKPKYLSLRLQLSQQTQKTQQPKKTNNKKQQQEPQLNHHHVYNDLQTEQDMQEENNVALLFTSDGGATLNGLLEDESTTLTAATTTEEEEESLSVMRCPEMEGLVKKAMRKRNDEEESEERWVSYSEVVEEKKEMMEEVNSCVVGIETMSFFGSLSLKLDHDGILNAWSDKGSLYVVDGCDESPQTVPDLFNASSIFPNGYGYGGDVNANTWKVPDGVGASNNNVKVKEEMGWKLGQREASLLRYKEKRQSRLFAKRIRYEVRKLNAEKRPRMKGRFVKRE 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00769 339 ProSiteProfiles CCT domain profile. 296 338 IPR010402 GO:0005515
Trre13g00769 339 MobiDBLite consensus disorder prediction 1 95 - -
Trre13g00769 339 MobiDBLite consensus disorder prediction 66 95 - -
Trre13g00769 339 Pfam CCT motif 296 338 IPR010402 GO:0005515
Trre13g00769 339 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 12 339 - -
Trre13g00769 339 MobiDBLite consensus disorder prediction 1 16 - -
Trre13g00769 339 MobiDBLite consensus disorder prediction 50 64 - -
Trre13g00769 339 MobiDBLite consensus disorder prediction 24 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00769 Trre-Chr13 5931147 5934669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00769 190 338 C2C2-CO-like Transcription Factor Family AT1G25440 38.961 9.49e-20 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre13g00769 CCT 4.4e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00769 - - psat:127128050 395.201