Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00743 ATGGAAAATCTATCACAGCTTGTATCAAACCATAATTGGGGAACTCACTTTGTCAATATTTCAGGATCTGTTCCGATCTATGGCTTTGCACAATGTTTTAAAGATCTCTCTCATACCGATTGTCTTCTTTGTTATGCCGCAAGCCGGACTAAGCTCCCTCGTTGTCTCCCATCGATCTCTGCTCGAATATATCTTGATGGTTGCTTCCTTCGATACGACAATTATAGTTTCTACTCCGAGGAAACTGACCCTTTGAGGGACAGTTTTACCTGCACCTCGACCTCTGAGAGGTTGGAGGTGCAAATGGAAAAGAGTGTTGAAAAAGTGATTGATGTTGTGGTCGTGGATGCGGTTAATGGTGGTGGTGGATTTGCTAAGAAAGAAGTCGAGGGTGTTTACGCCTTAGCACAGTGCTGGAACACTCTTGGGATTAATGGTTGTAGAAATTGTTTGAAGAATGCTGTGAAAAAAGTAAGAGGTTGTTTGCCAAATAAGGAAGGTAGAGCCTTGAATACTGGTTGTTATTTGAGATATTCAACAGACAACTTTTTCAATGAAGGTGTAAAAGATGGTGGGAATGAATCTTTAAGCAAAGGAGCTGTAATAGCAGCAGTGTTAGCAACCGCTGCAATTATTCTGCTTGCTCTCTCAGCCTCTTTTGCAGTGTTCAAAAAATTTTCAAATCTAAAAAAAGAAAAAAATAATCTGGATAAATTTTCATCTTCCATAACAAAATCTAGTTTGAATTACAAATACGAAATCCTCGAGAAAGCGACGGATTATTTCAATTCTTCCCGGCAAATAGGTCAAGGAGGATCAGGTTCAGTTTTCAAAGGTATTCTCCCTAACGGAAATGTCGTTGCGGTAAAGAGATTGGTATTCAATAATAGGCAATGGGTGGATGAGTTCTTCAATGAAGTAAATTTGATTAGTGGAATTGAACACAATAATCTTGTCAAGTTATTGGGTTGTAGCATTGAAGGACCTGAGAGTTTACTTGTATATGAGTACTTTCCCAACCAGAGTTTAGATCAATTTCTATTTGAAAATAGAAGAACTCAGATTCTAAATTGGAAGCAGCGGTTTAACATTATTCGTGGAACAGCAGAAGGGCTTGCTTATCTTCATCAAGGAACGAAAAAACGAATCATCCATAGAGATATCAAAAGCAGTAATATTCTTCTAGATGATAATCTTTCTCCTAAGATTGCAGATTTTGGCCTTGCGCGTTGTTTTGCTGCGGATAAAACACATTTGAGTACCGGAATTGCTGGAACACTTGGTTACATGGCTCCAGAGTACGTAATTCGAGGACAACTTACAGATAAAGCCGATGTCTATAGTTTTGGAGTACTTGTCCTTGAGATTGTAACCGGCAGAAGAAATAATGTCATCAAAGAGGATTCTGGATCACTTCTACAAACTGTTTGGAAACTTTACAGATCAAACACATTGGTTGAGAGTGTTGATTCAAGCTTAGGAGATGATTTTCCTGAAGCTGAGGCATCAAGAGTGTTTCATATTGGTTTACTTTGCACACAAGCTTCTGCTTCTCTTAGGCCATCCATGGACCAAGTTGTTGAAATGTTAAGAAATTCAGATTTAGATGTTCCTACACCAAAACAACCACCATTTCTGAACACTGCAACGCTAGACTCGGATAGTTCCATTAGGTCTTATAGTACAAACAGCTCTGTATCCAATGCTTTAAAAAAGATTGGAGTTTCACACAGTTACTCGGAGTCCTCTTCGGACGAGCCATCAAAAAGCGAAGAACCAATTGTGTAA 1788 0.3893 MENLSQLVSNHNWGTHFVNISGSVPIYGFAQCFKDLSHTDCLLCYAASRTKLPRCLPSISARIYLDGCFLRYDNYSFYSEETDPLRDSFTCTSTSERLEVQMEKSVEKVIDVVVVDAVNGGGGFAKKEVEGVYALAQCWNTLGINGCRNCLKNAVKKVRGCLPNKEGRALNTGCYLRYSTDNFFNEGVKDGGNESLSKGAVIAAVLATAAIILLALSASFAVFKKFSNLKKEKNNLDKFSSSITKSSLNYKYEILEKATDYFNSSRQIGQGGSGSVFKGILPNGNVVAVKRLVFNNRQWVDEFFNEVNLISGIEHNNLVKLLGCSIEGPESLLVYEYFPNQSLDQFLFENRRTQILNWKQRFNIIRGTAEGLAYLHQGTKKRIIHRDIKSSNILLDDNLSPKIADFGLARCFAADKTHLSTGIAGTLGYMAPEYVIRGQLTDKADVYSFGVLVLEIVTGRRNNVIKEDSGSLLQTVWKLYRSNTLVESVDSSLGDDFPEAEASRVFHIGLLCTQASASLRPSMDQVVEMLRNSDLDVPTPKQPPFLNTATLDSDSSIRSYSTNSSVSNALKKIGVSHSYSESSSDEPSKSEEPIV 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00743 595 Pfam Salt stress response/antifungal 124 180 IPR002902 -
Trre13g00743 595 Pfam Salt stress response/antifungal 15 75 IPR002902 -
Trre13g00743 595 ProSiteProfiles Gnk2-homologous domain profile. 1 77 IPR002902 -
Trre13g00743 595 SUPERFAMILY Protein kinase-like (PK-like) 245 562 IPR011009 -
Trre13g00743 595 Gene3D Phosphorylase Kinase; domain 1 222 337 - -
Trre13g00743 595 Pfam Protein tyrosine and serine/threonine kinase 265 530 IPR001245 GO:0004672|GO:0006468
Trre13g00743 595 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 27 562 - -
Trre13g00743 595 FunFam Cysteine-rich receptor-like protein kinase 2 229 337 - -
Trre13g00743 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 383 395 IPR008271 GO:0004672|GO:0006468
Trre13g00743 595 FunFam Cysteine-rich receptor-like protein kinase 3 87 183 - -
Trre13g00743 595 MobiDBLite consensus disorder prediction 576 595 - -
Trre13g00743 595 FunFam Cysteine-rich receptor-like protein kinase 42 1 77 - -
Trre13g00743 595 ProSitePatterns Protein kinases ATP-binding region signature. 268 290 IPR017441 GO:0005524
Trre13g00743 595 FunFam Cysteine-rich receptor-like protein kinase 2 338 538 - -
Trre13g00743 595 Gene3D - 1 77 IPR038408 -
Trre13g00743 595 Gene3D - 88 183 IPR038408 -
Trre13g00743 595 CDD STKc_IRAK 268 530 - -
Trre13g00743 595 ProSiteProfiles Gnk2-homologous domain profile. 84 183 IPR002902 -
Trre13g00743 595 Gene3D Transferase(Phosphotransferase) domain 1 338 538 - -
Trre13g00743 595 ProSiteProfiles Protein kinase domain profile. 262 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00743 595 SMART serkin_6 262 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00743 Trre-Chr13 5730404 5733089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00743 1 552 Receptor kinase-like Gene Family AT1G70520 46.410 4.89e-174 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre13g00743 PK_Tyr_Ser-Thr 3.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00743 - - gmx:100790404 884.019