Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00742 ATGAGCTCCAAAAAGAACACTCCATCACATGTTATTCTCTTGGTTCAAATACTTCTAATCATGTCATATTTACTTTCTAACTCATATTCAGACCCAAGAATCTCACAAGCTGGACTCTACTGTGGTGAACACAAAGCACCACCAAAATCAAACTATATCCCAAGTTTCATACAAGAAATGGAAAATCTATCACAGCTTGTATCAAACCATAATTGGGGAACTCACTTTGTCAATATTTCAGGATCTGTTCCGATCTATGGCTTTGCACAATGTTTTAAAGATCTCTCTCATACCGATTGTCTTCTTTGTTATGCCGCAAGCCGGACTAAGCTCCCTCGTTGTCTCCCATCGATCTCTGCTCGAATATATCTTGATGGTTGCTTCCTTCGATACGACAATTATAGTTTCTACTCCGAGGAAACTGACCCTTTGAGGGACAGTTTTACCTGCACCTCGACCTCTGAGAGGTTGGAGGTGCAAATGGAAAAGAGTGTTGAAAAAGTGATTGATGTTGTGGTCGTGGATGCGGTTAATGGTGGTGGTGGATTTGCTAAGAAAGAAGTCGAGGGTGTTTACGCCTTAGCACAGTGCTGGAACACTCTTGGGATTAATGGTTGTAGAAATTGTTTGAAGAATGCTGTGAAAAAAGTAAGAGGTTGTTTGCCAAATAAGGAAGGTAGAGCCTTGAATACTGGTTGTTATTTGAGATATTCAACAGACAACTTTTTCAATGAAGGTGTAAAAGATGGTGGGAATGAATCTTTAAGCAAAGGAGCTGTAATAGCAGCAGTGTTAGCAACCGCTGCAATTATTCTGCTTGCTCTCTCAGCCTCTTTTGCAGTGTTCAAAAAATTTTCAAATCTAAAAAAAGAAAAAAATAATCTGGATAAATTTTCATCTTCCATAACAAAATCTAGTTTGAATTACAAATACGAAATCCTCGAGAAAGCGACGGATTATTTCAATTCTTCCCGGCAAATAGGTCAAGGAGGATCAGGTTCAGTTTTCAAAGGTATTCTCCCTAACGGAAATGTCGTTGCGGTAAAGAGATTGGTATTCAATAATAGGCAATGGGTGGATGAGTTCTTCAATGAAGTAAATTTGATTAGTGGAATTGAACACAATAATCTTGTCAAGTTATTGGGTTGTAGCATTGAAGGACCTGAGAGTTTACTTGTATATGAGTACTTTCCCAACCAGAGTTTAGATCAATTTCTATTTGAAAATAGAAGAACTCAGATTCTAAATTGGAAGCAGCGGTTTAACATTATTCGTGGAACAGCAGAAGGGCTTGCTTATCTTCATCAAGGAACGAAAAAACGAATCATCCATAGAGATATCAAAAGCAGTAATATTCTTCTAGATGATAATCTTTCTCCTAAGATTGCAGATTTTGGCCTTGCGCGTTGTTTTGCTGCGGATAAAACACATTTGAGTACCGGAATTGCTGGAACACTTGGTTACATGGCTCCAGAGTACGTAATTCGAGGACAACTTACAGATAAAGCCGATGTCTATAGTTTTGGAGTACTTGTCCTTGAGATTGTAACCGGCAGAAGAAATAATGTCATCAAAGAGGATTCTGGATCACTTCTACAAACTGTTTGGAAACTTTACAGATCAAACACATTGGTTGAGAGTGTTGATTCAAGCTTAGGAGATGATTTTCCTGAAGCTGAGGCATCAAGAGTGTTTCATATTGGTTTACTTTGCACACAAGCTTCTGCTTCTCTTAGGCCATCCATGGACCAAGTTGTTGAAATGTTAAGAAATTCAGATTTAGATGTTCCTACACCAAAACAACCACCATTTCTGAACACTGCAACGCTAGACTCGGATAGTTCCATTAGGTCTTATAGTACAAACAGCTCTGTATCCAATGCTTTAAAAAAGATTGGAGTTTCACACAGTTACTCGGAGTCCTCTTCGGACGAGCCATCAAAAAGCGAAGAACCAATTGTGTAA 1965 0.3868 MSSKKNTPSHVILLVQILLIMSYLLSNSYSDPRISQAGLYCGEHKAPPKSNYIPSFIQEMENLSQLVSNHNWGTHFVNISGSVPIYGFAQCFKDLSHTDCLLCYAASRTKLPRCLPSISARIYLDGCFLRYDNYSFYSEETDPLRDSFTCTSTSERLEVQMEKSVEKVIDVVVVDAVNGGGGFAKKEVEGVYALAQCWNTLGINGCRNCLKNAVKKVRGCLPNKEGRALNTGCYLRYSTDNFFNEGVKDGGNESLSKGAVIAAVLATAAIILLALSASFAVFKKFSNLKKEKNNLDKFSSSITKSSLNYKYEILEKATDYFNSSRQIGQGGSGSVFKGILPNGNVVAVKRLVFNNRQWVDEFFNEVNLISGIEHNNLVKLLGCSIEGPESLLVYEYFPNQSLDQFLFENRRTQILNWKQRFNIIRGTAEGLAYLHQGTKKRIIHRDIKSSNILLDDNLSPKIADFGLARCFAADKTHLSTGIAGTLGYMAPEYVIRGQLTDKADVYSFGVLVLEIVTGRRNNVIKEDSGSLLQTVWKLYRSNTLVESVDSSLGDDFPEAEASRVFHIGLLCTQASASLRPSMDQVVEMLRNSDLDVPTPKQPPFLNTATLDSDSSIRSYSTNSSVSNALKKIGVSHSYSESSSDEPSKSEEPIV 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00742 654 ProSiteProfiles Protein kinase domain profile. 321 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00742 654 CDD STKc_IRAK 327 589 - -
Trre13g00742 654 MobiDBLite consensus disorder prediction 635 654 - -
Trre13g00742 654 FunFam Cysteine-rich receptor-like protein kinase 2 288 396 - -
Trre13g00742 654 Coils Coil 654 654 - -
Trre13g00742 654 ProSiteProfiles Gnk2-homologous domain profile. 143 242 IPR002902 -
Trre13g00742 654 Gene3D - 36 136 IPR038408 -
Trre13g00742 654 Gene3D - 147 242 IPR038408 -
Trre13g00742 654 Gene3D Phosphorylase Kinase; domain 1 281 396 - -
Trre13g00742 654 FunFam Cysteine-rich receptor-like protein kinase 2 397 597 - -
Trre13g00742 654 Pfam Protein tyrosine and serine/threonine kinase 324 589 IPR001245 GO:0004672|GO:0006468
Trre13g00742 654 Pfam Salt stress response/antifungal 183 239 IPR002902 -
Trre13g00742 654 Pfam Salt stress response/antifungal 46 134 IPR002902 -
Trre13g00742 654 SMART serkin_6 321 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00742 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Trre13g00742 654 SUPERFAMILY Protein kinase-like (PK-like) 304 621 IPR011009 -
Trre13g00742 654 ProSiteProfiles Gnk2-homologous domain profile. 34 136 IPR002902 -
Trre13g00742 654 FunFam Cysteine-rich receptor-like protein kinase 2 34 136 - -
Trre13g00742 654 Gene3D Transferase(Phosphotransferase) domain 1 397 597 - -
Trre13g00742 654 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Trre13g00742 654 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 86 621 - -
Trre13g00742 654 FunFam Cysteine-rich receptor-like protein kinase 3 146 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00742 Trre-Chr13 5730227 5733089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00742 5 486 Receptor kinase-like Gene Family AT5G40380 54.321 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre13g00742 PK_Tyr_Ser-Thr 3.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00742 - - gmx:100790404 937.947