Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00732 ATGGCTAGGAGCTGCTGGATTTTTAACAAAGGGGGATTTGCAACGAAACTGAAAAGCGCTACACTCTCTTTAGCTGATCAGATCAAGGATTGCGGCGCATATTGCGAATGTCCAAACTGTCATTATCGTATAGACAACAGCGATGTTTCGTGGCCAGGCCTTCCTCTTGGTACAAAGTTTGATCCTTCTGATGTAGAACTATTGGAACATTTAGCAGCTAAATGTGGTGTTGGGAACAGAGAGCCTCACATGTTTATTGAAGAGTTCATCCCAACATTAGAAGGAGACCAAGGGATTTGCTATACACATCCTGAAAATCTTCCAGGTGCTAAGAAAGATGGGAGTAGTGTTCATTTCTTTCACAGAACAATGAATGCATATAGTATTGGTCAGCGAAAGCGTCGAAAGATTCATCATCATGGTTCAACTGAACCTCATGTACGCTGGCATAAGACTGGTAAGACCAAAGCTGTAATAGAAAATGGAGTACATATGGGCTTTAAAAAGATCATGGTTCTATATATAAGATCCGAGAATGAATCCAAGTCCTACAAATCCGACTGGAAAATGCATCAGTACCATCTAGGGACTGATGAAGATGAGAAGAATGGAGAATATGTGGTTTCAAAAATATTTTATAAACAGGTTGAGAAAATCGAGGAGAAACCAATGGCTGAAGAACCTGACAATATAACATCGCGAACAAGTCCAAGGACTCCAAAACCAAATCCTCCAAATCCACCGCGCACAGGAAAATGTGTTGAAAATGATGATAACATCGATGAAGCCAAGGATGCCAAGTCTATCCCTATAGAATCACATGCCCCTCAATCTGATATTCAGGATCACGACAACACAGAAAACTCGGCATGGTTGGCTGATTTATCGCAGGCTTTGGAAAAATCCGAATATGATGGCTTGGATGACATATTATTTTGCAAGGAGATTTTAGATTCATCTACTCTATTTGATGATTTTGGATTGGACTTAATCACTACCAATGACCTTGCATATTATGAAAACAATATGACGGGAAACGGTAATGTAACTAGTGGAACATCAACTTCTGTCTTGGATACATTGGAATTCGGTAATCCTCCAGAAAACTCGGCATGGTTGGCCGGTGAATCACAGTCTTTAGAAAATTCTGAATATAATGGCTTGGATAACTTATTATTGTGCAACGAGGTTTTAGATTCGTCTGCTCTACTTGATGATTCTGGATTGGACTCGATCACCAACAGAATGACACAAAACGATAACATAACTAGTGGAACATCAACTTCTATCCTGGATACACTGGAATTGGGTACTCCTCCAGATTTTGATCTTTCGAATTTGACATTTGGTTCTCAAGACAGCATCCTTGACTGGGTGGACCGGTTATGA 1389 0.4017 MARSCWIFNKGGFATKLKSATLSLADQIKDCGAYCECPNCHYRIDNSDVSWPGLPLGTKFDPSDVELLEHLAAKCGVGNREPHMFIEEFIPTLEGDQGICYTHPENLPGAKKDGSSVHFFHRTMNAYSIGQRKRRKIHHHGSTEPHVRWHKTGKTKAVIENGVHMGFKKIMVLYIRSENESKSYKSDWKMHQYHLGTDEDEKNGEYVVSKIFYKQVEKIEEKPMAEEPDNITSRTSPRTPKPNPPNPPRTGKCVENDDNIDEAKDAKSIPIESHAPQSDIQDHDNTENSAWLADLSQALEKSEYDGLDDILFCKEILDSSTLFDDFGLDLITTNDLAYYENNMTGNGNVTSGTSTSVLDTLEFGNPPENSAWLAGESQSLENSEYNGLDNLLLCNEVLDSSALLDDSGLDSITNRMTQNDNITSGTSTSILDTLELGTPPDFDLSNLTFGSQDSILDWVDRL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00732 462 Pfam No apical meristem (NAM) protein 55 195 IPR003441 GO:0003677|GO:0006355
Trre13g00732 462 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 6 300 IPR044799 GO:0003700
Trre13g00732 462 FunFam NAC domain-containing protein 8 63 218 - -
Trre13g00732 462 ProSiteProfiles NAC domain profile. 54 214 IPR003441 GO:0003677|GO:0006355
Trre13g00732 462 SUPERFAMILY NAC domain 43 214 IPR036093 GO:0003677|GO:0006355
Trre13g00732 462 MobiDBLite consensus disorder prediction 222 256 - -
Trre13g00732 462 Gene3D NAC domain 63 218 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00732 Trre-Chr13 5636576 5639924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00732 37 223 NAC Transcription Factor Family AT1G28470 51.256 2.63e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre13g00732 NAM 9.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00732 - - mtr:25497909 587.03