LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g00728	ATGGAATCACCTGTTGATGGAGTTGAGTGTTTACCTAATTCTGTTTCTGGTATAGTAGATCACAATCCTCCTTCAACATCTGGGATTCCGAGCTCTTCTCGACCGCCTTTAATGGCATCATCTAGAAATCAAGGAAGGATGAAAGATACCTATCAGGAACCTAACGATGCGAGCCATACCGAAACTTTTGAAAGTTATTTGGCAAAGAATATTTCCACAATCGAAACAAAATTGTGCATCAGTGATGATTCCTCTAATCACAACTCCGACGAGATATTAGAATCTGAGAATTGCATATTAGGTTCGTCAAAAGGACATATGGATCAGTCAAATTCGGAGATTATGTTTTGCTCAAGTCCTCAGAGTAGTTTATATTCCGCTGCTTATTCAGAAGCCAAAGAAAGTTTCACCAATACCGGAATCAATGGATCTGTTAGTGTTGATAAGTCGATTGAAAGCGGAGAGGTTACTAATTCGGGGGAGAGCAGGAAGACGAGCATCTGTAGAGGGAGTACTGGAAGTGACGTTAGCGATGAAAGCAGCATCAGTAGTTTGAGCAGTTCTTTATATAAACCGCATAAAGCAAATGATGTAAGATGGGAAGCAATTCAAGCTATCCGAGTTCGAGACGGTGGCTTGGAAATGAGACATTTCAGGTTGTTGAAGAAATTGGGATGTGGAGATATAGGAAGTGTATATCTAGCAGAGTTAAGTAGCACAAAGACTTGTTTTGCTATGAAAGTAATGAACAAGACTGAATTGTCGAGTCGCAAGAAGCTTCCGAGGGCTCAGACAGAGAGAGAGATATTGCAGTCTCTAGATCATCCGTTTCTGCCTTCGTTGTACACACACTTTGAGACGGAGTCATTCTCTTGCTTGGTTATGGAGTTTTGTCCTGGTGGAGATCTCCATGCACTCCGGCAACGACAACCCGGGAAGTATTTTTCAGAACATGCTGCAAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGAATCATCTATAGAGACCTCAAACCCGAGAACGTGTTGGTGAGAGAAGATGGTCACATAATGCTATCAGATTTCGACCTCTCTCTAAGGTGCGCCGTCAGTCCGACTCTAGTAAAATCTGCAAACTTTAACTTAGAGACAAAAGGCTCAGGATACTGCGTTCAACCCGCTTGCATCGAACCAACTTGTGTTATTCAGCCAGACTGCATCAAACCTTCTTGTTTCACACCACGTTTTCTACAAAGCAAGTCCAAGAAGAAAGAAAAGAAGTTGAAACCTAAGAATGACGTGCACAATCAGGTGACACCTCTGCCCGAGCTTATGGCCGAGCCCACAAATGCTCGATCAATGTCCTTCGTAGGCACGCACGAGTACCTTGCGCCTGAAATCATCAAAGGTGAAGGTCATGGCAGTGCTGTAGACTGGTGGACATTTGGGATATTCTTATACGAGCTATTGTTTGGTAGAACGCCATTCAAAGGTTCGGCGAATCGGGCAACTTTATTTAATGTAGTTGGGCAGCCCTTAAGATTTCCAGAATCTCCAAGTGTTAGCTTTGCTGCCAGGGACTTGATTAGGGGTTTACTTGTGAAAGAGCCTCAGCATCGTCTTGCCTATAGACGCGGAGCTACAGAGATAAAACAACATCCATTCTTTCAAAATATTAACTGGGCGCTGATCCGTTGCGCCACTCCTCCAGAAGTGCCGAGACAGGCCATGAAAGCAGCACTCACACCTGAGAAGAAGCCGCCGGGAGTGAAGCCTTCTGGTAACTATTTAGATATTGATTTCTTTTGA	1809	0.4378	MESPVDGVECLPNSVSGIVDHNPPSTSGIPSSSRPPLMASSRNQGRMKDTYQEPNDASHTETFESYLAKNISTIETKLCISDDSSNHNSDEILESENCILGSSKGHMDQSNSEIMFCSSPQSSLYSAAYSEAKESFTNTGINGSVSVDKSIESGEVTNSGESRKTSICRGSTGSDVSDESSISSLSSSLYKPHKANDVRWEAIQAIRVRDGGLEMRHFRLLKKLGCGDIGSVYLAELSSTKTCFAMKVMNKTELSSRKKLPRAQTEREILQSLDHPFLPSLYTHFETESFSCLVMEFCPGGDLHALRQRQPGKYFSEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSANFNLETKGSGYCVQPACIEPTCVIQPDCIKPSCFTPRFLQSKSKKKEKKLKPKNDVHNQVTPLPELMAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNINWALIRCATPPEVPRQAMKAALTPEKKPPGVKPSGNYLDIDFF	602

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g00728	602	Pfam	Protein kinase domain	219	369	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g00728	602	Pfam	Protein kinase domain	453	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g00728	602	SMART	serkin_6	218	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g00728	602	SUPERFAMILY	Protein kinase-like (PK-like)	192	576	IPR011009	-
	Trre13g00728	602	PANTHER	FLIPPASE KINASE 1-RELATED	81	579	-	-
	Trre13g00728	602	MobiDBLite	consensus disorder prediction	18	42	-	-
	Trre13g00728	602	FunFam	Serine/threonine-protein kinase D6PK-like	216	301	-	-
	Trre13g00728	602	FunFam	serine/threonine-protein kinase D6PK-like	451	574	-	-
	Trre13g00728	602	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	339	351	IPR008271	GO:0004672\|GO:0006468
	Trre13g00728	602	MobiDBLite	consensus disorder prediction	152	182	-	-
	Trre13g00728	602	FunFam	serine/threonine-protein kinase D6PK-like	302	369	-	-
	Trre13g00728	602	MobiDBLite	consensus disorder prediction	14	42	-	-
	Trre13g00728	602	Gene3D	Transferase(Phosphotransferase) domain 1	304	573	-	-
	Trre13g00728	602	CDD	STKc_phototropin_like	216	576	-	-
	Trre13g00728	602	Gene3D	Phosphorylase Kinase; domain 1	211	303	-	-
	Trre13g00728	602	ProSiteProfiles	Protein kinase domain profile.	218	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g00728	Trre-Chr13	5569559	5572463	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g00728	142	602	AGC Kinase Gene Family	AT5G47750	73.805	0.0	697

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Trre13g00728		Pkinase	3.8e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g00728	K08286		-	gmx:100802402	920.228