Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00722 ATGTCCTCCACCTTCTCCATCAGTTCAAATTTACTTCCTTCTTCCCCACACTCCAACATTCACAACTTCCACACCTTCTTCATCTCCAACCACAACAAACCCCAAACCTCTTTTCTCTTAACCAAATTCTGCTCCGTCAGCACCCTTAAAACCCGTTGCGCTCCACATGATTCCTCAAACTTCCATCACATTCTCGCCAAATCCATTTTATCCGGAGGCGATTGGTGGACATTACCGAAACATCAGGAAGAAGACCATGCAGAACCGACTTCGGCGATTCTCGTTCTCAGACGAATGTGGGAGTTGGTTGCCGATGAGCGCTTGGTCTCGCTTGGAGCTTTCGGGTCTCTTGTCATTGCTGCTCTTTCAGAAATTACCATGCCAAGTATATTAGCTGCATCAATATTTTCAGCACAGAGTGGTGACACTGTGGCATTCTCTAGGAATGCAATGTTTTTGGTTCTTCTATGTTTTACTTCAGGGATATGCAGTGGTTTGCGAAGTGGCTGCTTTGGAATTTTGAATGTAACCTTGGTAAAGCGTCTACGAGAAAACTTGTATGCAACCATTCTTTTTCAGGACATATCTTATTTTGATAAAGAAAAAGTTGGTACCTTGACAAGCAGGCTCGCCGCAGATTGTCAACGGCTTTCACATGTTATAGGAAATGATCTTCAGTTGATATTACGCAACACTTTGCAGGGAACTGGAGCGATAATTAATTTAATGGCTTTATCTTGGCCTCTTGCATTATCTGCATTGATGATTTGTTCTGTGTTATCTGCAATTTTCCTGGTTTATGGCAGGTACCAAAGAAAAGCAGCAAAGTTAACCCAAGATTTCACAGCTTGTGCCAATGACGTAGCTCAGGAGACACTTTCTTTGATAAGAACTGTCCGAGTGTATGGAACCGGAAAAGAAGAATTTGAAAGGTACAATCAGTGGCTACAAAAATTAGCATTTATTAGCGTTCGAGAGAGTGTGGGTAATGGTTTCTGGAACATGAGCTTTAACACTCTTTATCGATCAACTCAGATAATTGCAGTGATTTTTGGAGGAATGTCCATTCTCAGTTGTCGTGTAACTGCTGAGCAACTTACTAAGTATGTATTATACTGTGAGTGGTTGATTTATGCTGCTTGGAGGGTGACAAACAGCTTATCATCATTACTACAGTCCATTGGAGCATCTGAACAAATTTTCCAATTGATGAATCTTTTGCCCTGTGACCAATTCTTAGTGAAAGGAATTAAGTTGCAGAGGTTAATGGGCCATATTCAGTTTGTAAATGTTTCATTTCATTATCCAGCAAGGAGTATGATGCCTGTTCTTGATCACTTAAACTTCTCTGTAAAACCAAATCAAGTCATTGCCATTGTTGGTCTGAGTGGTAGTGGAAAGAGCACATTAATCAACCTTTTACTTCGTCTCTATGAGCCTAGTAGCGGCCAGATATGTATTGATGGCATCCCTCTAAAGGAGTTGGATATCAGGTGGCTGAGGCAGAACATCGGATATGTTTCGCAGGAACCGAATATCTTTCACATGGACATAAAGTCAAACATAAAATATGGTTGTCCTAGGAACATAAATCAAGAAGATGTTGAACAGGCAGCAAAACTGGCATACGCCCATGACTTTATTTCATCACTTCCTAATGGCTATGAAACCCTTGTTGATGACAATGCGCTTAGCGGGGGACAAAAACAGCGAATCGCCATTGCGAGGGCCATTCTTAGGGACCCAGTTATTATGATTCTTGACGAACCAACCAGCGCCTTGGATTCTGAAAGTGAGCATTACATCAAGGAGGTATTGTATGCATTCAAAAATGAATCTAAATCAAGAACCGTCATTATCATAGCGCATAGGCTTTCTACTGTAAAAGCTGCTGACAGGATCATTGTTATTGATAATGGTCAGATTATTGAGATGGGTAACCATGAAGAGCTTATAGTCAAGAAGGGGCTCTATGCGAAGTTAAATAAATTTCAAGCTGATATTGTAACTTGA 2013 0.4098 MSSTFSISSNLLPSSPHSNIHNFHTFFISNHNKPQTSFLLTKFCSVSTLKTRCAPHDSSNFHHILAKSILSGGDWWTLPKHQEEDHAEPTSAILVLRRMWELVADERLVSLGAFGSLVIAALSEITMPSILAASIFSAQSGDTVAFSRNAMFLVLLCFTSGICSGLRSGCFGILNVTLVKRLRENLYATILFQDISYFDKEKVGTLTSRLAADCQRLSHVIGNDLQLILRNTLQGTGAIINLMALSWPLALSALMICSVLSAIFLVYGRYQRKAAKLTQDFTACANDVAQETLSLIRTVRVYGTGKEEFERYNQWLQKLAFISVRESVGNGFWNMSFNTLYRSTQIIAVIFGGMSILSCRVTAEQLTKYVLYCEWLIYAAWRVTNSLSSLLQSIGASEQIFQLMNLLPCDQFLVKGIKLQRLMGHIQFVNVSFHYPARSMMPVLDHLNFSVKPNQVIAIVGLSGSGKSTLINLLLRLYEPSSGQICIDGIPLKELDIRWLRQNIGYVSQEPNIFHMDIKSNIKYGCPRNINQEDVEQAAKLAYAHDFISSLPNGYETLVDDNALSGGQKQRIAIARAILRDPVIMILDEPTSALDSESEHYIKEVLYAFKNESKSRTVIIIAHRLSTVKAADRIIVIDNGQIIEMGNHEELIVKKGLYAKLNKFQADIVT 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00722 670 PANTHER ABC TRANSPORTER B FAMILY 82 662 IPR039421 -
Trre13g00722 670 SMART AAA_5 453 641 IPR003593 GO:0016887
Trre13g00722 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 665 IPR027417 -
Trre13g00722 670 Pfam ABC transporter transmembrane region 115 374 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g00722 670 SUPERFAMILY ABC transporter transmembrane region 97 410 IPR036640 GO:0005524|GO:0016020
Trre13g00722 670 CDD ABC_6TM_TAP 113 400 - -
Trre13g00722 670 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 426 664 IPR003439 GO:0005524
Trre13g00722 670 Gene3D - 416 668 IPR027417 -
Trre13g00722 670 ProSitePatterns ABC transporters family signature. 564 578 IPR017871 GO:0005524|GO:0016887
Trre13g00722 670 Gene3D ABC transporter type 1, transmembrane domain 92 409 IPR036640 GO:0005524|GO:0016020
Trre13g00722 670 FunFam Multidrug ABC transporter ATP-binding protein 418 668 - -
Trre13g00722 670 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 111 392 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g00722 670 Pfam ABC transporter 444 592 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00722 Trre-Chr13 5534778 5543427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00722 181 665 Calmodulin-binding Proteins AT2G36910 34.077 7.37e-73 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00722 - - gmx:100797529 992.645