Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00721 ATGGAACAACACCACCCTATGAGTAACAAACAATCCTCTGATGACAGCGACGAGAAAACAACCGAATTCCGACCATTCTCACCGGCGGTAACACCTCATATGCGTACATTTCACATATCTTGGTTCAACCTCTTCTCATGTTTCTTCACCACCTTCGCTATCCCCCCTCTCCTCCCCATCATCCGCCAAGACCTCAACCTCACAGCCGCGGACATAGGCACAGCTGGCTCTGCCTCTTTTGCCGGCTCCATCTTCTCCCGTCTCCTGATGGGTCCTATCTGTGACCTTGTAGGTCCTCGTAAAGCATCAGGTATTCTTTCTATCATAACCGCACCCATCATCCTCATCACTTCAATCGCCTCTACTCCAGGTGAATTCATTGTCGTACGCTTCCTTGTCGGTTTCTCTCTTGCCAATTTTGTTGCAAACCAGTACTGGATGAGTTCCATGTTCTCTGGTACCGTTGTTGGCTCAGCCAACGCTTTCGCTGCTGGCTGGGCCAACACTGGTGCCGGAGTCACACAACTTCTTATGCCTCTAATTTACTCATCTCTCTTGTTTATCCCACATGTTTCATCCTCAACCGCTTGGCGGTTATCATTCATAGTTCCCGCCGTTTTTCAGACCATTACAGGTATCTTAGTTTTAGCATTCGGCCACGACAACAAAAACAAAAACCAGTATTCTCGAACTACTCCTCTGGATTCAATCAATTCAAAGGAGAGTCACGAGAATGCATTGAAGGTAGTTTTTCGCGGGTTAGGCGATTATAGAGGATGGATATTGGGGCTACTTTATGGATTCTCGTTTGGGGTTGAAATGACAACAGATAACATAATAGCAGAATATTTTTATGACAGATTTGGGGTGAATCTACAAAGTGCAGGAACAATTGCAGCTTGTTTTGGGATGACAAATTTTTTTGCAAGACCAATGGGAGGTTTTGTTTCTGACAAAATGGGGAAGAGATTTGGTGTGAGAGGGAGGTTGTGGAGTTTGTGGATTGTACAAACGGTGGCGGGTTTGCTTTGTGTGTTGCTTGGACAAGTTAACTCGTTGTGGAGTTATATTATTGTTATGTGTTGTTTTTCAGCGTTTGTACAAGCTGCTTCTGGCCTCATATTTGGTGTGGTCCCTTTTGTTTCTAAAAGATCACTAGGCGTAATATCAGGAATGACAGGGAGTGGTGGAACTATAGGAGCTGTTGTGACTCAAATGCTTTTGTTCTCAGGTGACAAATTATCAAAACAAACAAGCATATCATTAATGGGTCTAATGATGATATTATGTACTCTTCCGGTAACCTTGATCTACTTCCCTCGATCCGGTGGCATCTTTTGCGGTCCTTCTACGGATCATGATGATGCTGATGATGAAGAAAATTATAGCTTGTTGGAGTAG 1401 0.4425 MEQHHPMSNKQSSDDSDEKTTEFRPFSPAVTPHMRTFHISWFNLFSCFFTTFAIPPLLPIIRQDLNLTAADIGTAGSASFAGSIFSRLLMGPICDLVGPRKASGILSIITAPIILITSIASTPGEFIVVRFLVGFSLANFVANQYWMSSMFSGTVVGSANAFAAGWANTGAGVTQLLMPLIYSSLLFIPHVSSSTAWRLSFIVPAVFQTITGILVLAFGHDNKNKNQYSRTTPLDSINSKESHENALKVVFRGLGDYRGWILGLLYGFSFGVEMTTDNIIAEYFYDRFGVNLQSAGTIAACFGMTNFFARPMGGFVSDKMGKRFGVRGRLWSLWIVQTVAGLLCVLLGQVNSLWSYIIVMCCFSAFVQAASGLIFGVVPFVSKRSLGVISGMTGSGGTIGAVVTQMLLFSGDKLSKQTSISLMGLMMILCTLPVTLIYFPRSGGIFCGPSTDHDDADDEENYSLLE 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00721 466 CDD MFS_NRT2_like 37 436 IPR044772 GO:0015112
Trre13g00721 466 Pfam Major Facilitator Superfamily 41 403 IPR011701 GO:0022857|GO:0055085
Trre13g00721 466 SUPERFAMILY MFS general substrate transporter 7 438 IPR036259 -
Trre13g00721 466 MobiDBLite consensus disorder prediction 1 22 - -
Trre13g00721 466 FunFam Probable high-affinity nitrate transporter 2.4 29 229 - -
Trre13g00721 466 Gene3D MFS general substrate transporter like domains 32 231 IPR036259 -
Trre13g00721 466 FunFam Nitrate transporter 2.1 243 444 - -
Trre13g00721 466 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 14 462 IPR044772 GO:0015112
Trre13g00721 466 MobiDBLite consensus disorder prediction 1 25 - -
Trre13g00721 466 ProSiteProfiles Major facilitator superfamily (MFS) profile. 36 442 IPR020846 GO:0022857
Trre13g00721 466 Gene3D MFS general substrate transporter like domains 242 445 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00721 Trre-Chr13 5531166 5533807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00721 15 457 Inorganic Solute Cotransporters AT5G14570 62.611 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00721 K02575 - cave:132180989 608.986