Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00716 ATGGCATCTTCTTCAAGCTGCTACTCAAATTCACCATGTGCTGCCTGCAAGTTTTTGAGAAGGAAGTGCATGCCAGATTGCATATTTGCTCCATATTTTCCACCAGAAGAACCACAAAAATTTGCAAATGTTCACAAAATATTTGGTGCAAGCAATGTGAGTAAACTTTTGAATGAAGTTCAAGCACATCAAAGAGAAGATGCAGTGAATTCTCTTGCTTATGAAGCTGAAGCAAGGATTAAAGATCCTGTTTATGGTTGTGTTGGTGCTATTTCAGTCCTACAAAGACAAGTTATTAGACTCCAAAAAGAACTTGATGCTACAAATGCTGATTTGATTCGTTATACAACTTGCACTGATCATATACTTCCAAATAATCATCATCAAGATCACCAAGTTACAAGAATTCATGAAGATGGAGGAGGTTCTTCTCTTGGTGGTACTCCTGCAAATTTTTACTATCCTCCTTGGAACAATGATCCACTTGGAGATGGTAATTATCACACAGGAGGTGGAGGTGACAATATATAA 531 0.3748 MASSSSCYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQAHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTTCTDHILPNNHHQDHQVTRIHEDGGGSSLGGTPANFYYPPWNNDPLGDGNYHTGGGGDNI 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00716 176 Coils Coil 91 111 - -
Trre13g00716 176 MobiDBLite consensus disorder prediction 156 176 - -
Trre13g00716 176 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Trre13g00716 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 126 - -
Trre13g00716 176 Pfam Lateral organ boundaries (LOB) domain 12 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00716 Trre-Chr13 5496517 5497047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00716 6 118 AS2 family AT3G27650 83.186 1.34e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre13g00716 LOB 2.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00716 - - gmx:100306630 249.595