Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00706 ATGGGAAGGGATTCTTCATTGCAACTCAAAATTGTATGTTTAATTATTGTGTTACATTTGTTAGCATGTTCAAGGATGCAAAGAAGCCACTGCTTGGTGCCTCAAAGGTCCATTATGAGCATAGGTGCTGTGCTTGATTTGGATTCATTAATGGGAAAACAACAGAAGATAGCAATGGAAATTGCAGTGCAAGAGTTCAACAACCAATTAAGTTCTTCTAAGCTGGATTTGCAGATAAAAGATTCACATGGAAATTCTGCTCAAGTAATTGCTGGTGTTATGGATCTCTCATTGAGCAACCAAGTGTTGGCCATCACAGGAACTATTACACACAATGAAGCAACACTAGCAAGTGAATTGAGTGACACCATAAAGAACATTCCTATCATGTCTCTAACTTCTTTTACAGGCAGACAAGAATTATTATCTTCAAGATTGCCACATTTCATCCAAGTAGGAGATGATATTAACCTTAACATGCAATGCATTGTAGCAATTGTAGGATATCTCAAATGGAAAAAGGTAACAGTAATTTATGAACTTAATAATGACTTTTCCTCTGATCCAGGAAGGATACTACTTAGTCTCTCTTATTCTCTTAAACTAATTGGTTCTGAAATTGATAACCATTTAGCTTTTCCTTCCTTATCCACTCTTTTAGATCCAAACACTACAATTGAAAATGAGCTTAATAAGCTGAAAAGGAAGAGTAATAGGGTCTTCTTGATTGTTAATTCTTCTTTGGAGCTGGCTAACATGCTTTTTGAGAAAGCAAATCAAATAGGTTTGATGGAAAAAGAATCTGTGTGGATTATCCCAAATATGGTTGCTGGTCTTCTTGATTCAGTTAACTCTTCTGTTATATTCAACATGCAAGGTGTTTTAGGATTTAAAACATACTTTATGGAAATGAATGAGGCTTTTAGAGAGTTCAAGTTCAAATTTCAAAGAAGGTTTGCACTAGAATACCCCAAAGAAGATAACATTAACCCAAGTATCTTTGCACTTCAAGCTTATGATGCAACTTGGGCTATTTTTGAGGCTGCAAATAAATCATCATTACAAGGAAAGCTTAGCCTTGAACAATTCTCAGAAAAGATTTTGTCCAATAAATTTCACAGACTAAGTAGAAACACTTTCTCAAAGAATAGACCATTGATGCAATCACAATCCTTTAACATAATAAATGTGATAGGGAAAAGTTATAGAGAAATGGCATTTTGGACTCCAACACTTGGTTTTTCCAAGAACTTATTAAGCCATCAATTAAATTTAAAGGAGAAGAAAAACACAAACAATGATCATGATTCTAATGGAGTTTTCAGCACAGTATATTGGCCTGGAGACATGCAATCGGTTCCTAAGGGATGGACTCACAGTAATGAGGAAAGATCATTGAAAATAGGAGTACCTTCCAATGGTGCCTTTACTCAATTTGTGAATGTAACACATGACAAGACTATGAACGGATCTTCAATCACTGGTTTCTCTATTACTGTCTTTAAAGAAGCTGTCAAGCTTTTACCTTATGATTTACATTACAATTTTATTCCTTTCAATGGCTCATATGATGAAATGGTTCATCAGGTCCACAATAAAGCATTGGATGGTGCGGTTGGTGATACAGGGATAATGGCATATAGATATAGTTTAGTTGATTTCTCACAACCTTATATTGAATCTGACCTCCACATGGTGGTTACTGAACAACCAGAGAAATCAAAAACATGGAAGTTTTTGGATGCCTTTACTAAAGAGATGTGGCTTTTGATAGCAGCTATTCATATTTTTGTAGGCTTTGTTATTTGGTTGATTGAAGGGGAAGATAATCCAGATCTAAGCGGAATTGGTTCCATGCTATGGTTTTTAGTCACTGTACTATTTTATGCTCACAGAGAACCAATAAGAAGACCGTTAGCTCGAATTGTGCTAGGACCATGGTTATTTGCTATTTTCATTGTGACAAATAGTTTCACAGCAAGTTTGACATCCATAACTATATCACAAGTAAAGCCATCTGTGTTAGATATTCAGACCCTTAAAGAAAGAAACTCACCAGTTGGGTGTAATGGGAATTCATTCATTGTGAATTATTTGACAGAAGTACTAAAGTTTAAGCCTGAGAACATTAGGAAAATAAATTCCATCAGTGATTACCCTGCTGCCTTTGAGAACAAGGATATAGAAGCCGCCTTCTTTGTTGGGCCGCATGCTAGAGTCTTTCTAGCGAAGTACTCATGTAAGGGACTAATCAACGCAGGGAACATTTTCCGGCTTGGTGGCTTTGGCTTTGTATATCCAAAAGGTTCTAGTTTGGCTACTGATATATCAGAGGCATTGCTGAATATGATAGAGAGTGGACAAATAAAAGAGCTGGAAAACGATATGTTGAATAAAATAAAGAATGAAGGCATAGCCAATTGTTCTTCAAAGAAAAAGGGGAAAGATAATTCATCAATTGACATTCCACCATTCGTTGGTTTATTTTCCATTTGTTCTTCTTTTGCTATTCTTGTTTTGTCATATCACACAATTTGTTTGTTGGTGAAGAAGAACTTAGAGACCTTGATATACCTCATAGTATTAACATTAATTCAATTGTGGAGAATATGGAACTGGACAACCAAATACTTCTCTCGGATCATGAGAAGAGTAAGCAGTTGCGTAGAAACAAGAAATGCAGAAGAGGATGTCAATAATGGCCAGCAAAACCCAGTGCTAGTGGTTGCTCATGCTTCATCATGA 2745 0.3588 MGRDSSLQLKIVCLIIVLHLLACSRMQRSHCLVPQRSIMSIGAVLDLDSLMGKQQKIAMEIAVQEFNNQLSSSKLDLQIKDSHGNSAQVIAGVMDLSLSNQVLAITGTITHNEATLASELSDTIKNIPIMSLTSFTGRQELLSSRLPHFIQVGDDINLNMQCIVAIVGYLKWKKVTVIYELNNDFSSDPGRILLSLSYSLKLIGSEIDNHLAFPSLSTLLDPNTTIENELNKLKRKSNRVFLIVNSSLELANMLFEKANQIGLMEKESVWIIPNMVAGLLDSVNSSVIFNMQGVLGFKTYFMEMNEAFREFKFKFQRRFALEYPKEDNINPSIFALQAYDATWAIFEAANKSSLQGKLSLEQFSEKILSNKFHRLSRNTFSKNRPLMQSQSFNIINVIGKSYREMAFWTPTLGFSKNLLSHQLNLKEKKNTNNDHDSNGVFSTVYWPGDMQSVPKGWTHSNEERSLKIGVPSNGAFTQFVNVTHDKTMNGSSITGFSITVFKEAVKLLPYDLHYNFIPFNGSYDEMVHQVHNKALDGAVGDTGIMAYRYSLVDFSQPYIESDLHMVVTEQPEKSKTWKFLDAFTKEMWLLIAAIHIFVGFVIWLIEGEDNPDLSGIGSMLWFLVTVLFYAHREPIRRPLARIVLGPWLFAIFIVTNSFTASLTSITISQVKPSVLDIQTLKERNSPVGCNGNSFIVNYLTEVLKFKPENIRKINSISDYPAAFENKDIEAAFFVGPHARVFLAKYSCKGLINAGNIFRLGGFGFVYPKGSSLATDISEALLNMIESGQIKELENDMLNKIKNEGIANCSSKKKGKDNSSIDIPPFVGLFSICSSFAILVLSYHTICLLVKKNLETLIYLIVLTLIQLWRIWNWTTKYFSRIMRRVSSCVETRNAEEDVNNGQQNPVLVVAHASS 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00706 914 SUPERFAMILY Periplasmic binding protein-like I 39 457 IPR028082 -
Trre13g00706 914 Gene3D - 35 156 - -
Trre13g00706 914 SUPERFAMILY Periplasmic binding protein-like II 442 794 - -
Trre13g00706 914 Gene3D - 761 793 - -
Trre13g00706 914 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 851 IPR015683 -
Trre13g00706 914 Gene3D - 157 330 - -
Trre13g00706 914 Pfam Receptor family ligand binding region 56 356 IPR001828 -
Trre13g00706 914 CDD GluR_Plant 466 797 - -
Trre13g00706 914 FunFam Glutamate receptor 576 708 - -
Trre13g00706 914 PIRSF IGluLR_plant 6 857 IPR017103 -
Trre13g00706 914 Pfam Ligand-gated ion channel 795 832 IPR001320 GO:0015276|GO:0016020
Trre13g00706 914 SMART GluR_14 465 799 IPR001320 GO:0015276|GO:0016020
Trre13g00706 914 FunFam Glutamate receptor 159 329 - -
Trre13g00706 914 Gene3D - 664 760 - -
Trre13g00706 914 Gene3D - 459 587 - -
Trre13g00706 914 FunFam Glutamate receptor 461 576 - -
Trre13g00706 914 Pfam Bacterial extracellular solute-binding proteins, family 3 490 794 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00706 Trre-Chr13 5421434 5425887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00706 20 840 Ion Channels AT2G29120 30.000 2.09e-102 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00706 - - mtr:11432453 1307.35