Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00705 ATGACATTCTCTTGGTTGATTAACATTTCTGGAATGGGAAGGGATTCTTCATTGCAACTCAAAATTGTATGTTTAATTATTGTGTTACATTTGTTAGCATGTTCAAGGATGCAAAGAAGCCACTGCTTGGTGCCTCAAAGGTCCATTATGAGCATAGGTGCTGTGCTTGATTTGGATTCATTAATGGGAAAACAACAGAAGATAGCAATGGAAATTGCAGTGCAAGAGTTCAACAACCAATTAAGTTCTTCTAAGCTGGATTTGCAGATAAAAGATTCACATGGAAATTCTGCTCAAGTAATTGCTGGTGTTATGGATCTCTCATTGAGCAACCAAGTGTTGGCCATCACAGGAACTATTACACACAATGAAGCAACACTAGCAAGTGAATTGAGTGACACCATAAAGAACATTCCTATCATGTCTCTAACTTCTTTTACAGGCAGACAAGAATTATTATCTTCAAGATTGCCACATTTCATCCAAGTAGGAGATGATATTAACCTTAACATGCAATGCATTGTAGCAATTGTAGGATATCTCAAATGGAAAAAGGTAACAGTAATTTATGAACTTAATAATGACTTTTCCTCTGATCCAGGAAGGATACTACTTAGTCTCTCTTATTCTCTTAAACTAATTGGTTCTGAAATTGATAACCATTTAGCTTTTCCTTCCTTATCCACTCTTTTAGATCCAAACACTACAATTGAAAATGAGCTTAATAAGCTGAAAAGGAAGAGTAATAGGGTCTTCTTGATTGTTAATTCTTCTTTGGAGCTGGCTAACATGCTTTTTGAGAAAGCAAATCAAATAGGTTTGATGGAAAAAGAATCTGTGTGGATTATCCCAAATATGGTTGCTGGTCTTCTTGATTCAGTTAACTCTTCTGTTATATTCAACATGCAAGGTGTTTTAGGATTTAAAACATACTTTATGGAAATGAATGAGGCTTTTAGAGAGTTCAAGTTCAAATTTCAAAGAAGGTTTGCACTAGAATACCCCAAAGAAGATAACATTAACCCAAGTATCTTTGCACTTCAAGCTTATGATGCAACTTGGGCTATTTTTGAGGCTGCAAATAAATCATCATTACAAGGAAAGCTTAGCCTTGAACAATTCTCAGAAAAGATTTTGTCCAATAAATTTCACAGACTAAGTAGAAACACTTTCTCAAAGAATAGACCATTGATGCAATCACAATCCTTTAACATAATAAATGTGATAGGGAAAAGTTATAGAGAAATGGCATTTTGGACTCCAACACTTGGTTTTTCCAAGAACTTATTAAGCCATCAATTAAATTTAAAGGAGAAGAAAAACACAAACAATGATCATGATTCTAATGGAGTTTTCAGCACAGTATATTGGCCTGGAGACATGCAATCGGTTCCTAAGGGATGGACTCACAGTAATGAGGAAAGATCATTGAAAATAGGAGTACCTTCCAATGGTGCCTTTACTCAATTTGTGAATGTAACACATGACAAGACTATGAACGGATCTTCAATCACTGGTTTCTCTATTACTGTCTTTAAAGAAGCTGTCAAGCTTTTACCTTATGATTTACATTACAATTTTATTCCTTTCAATGGCTCATATGATGAAATGGTTCATCAGGTCCACAATAAAGCATTGGATGGTGCGGTTGGTGATACAGGGATAATGGCATATAGATATAGTTTAGTTGATTTCTCACAACCTTATATTGAATCTGACCTCCACATGGTGGTTACTGAACAACCAGAGAAATCAAAAACATGGAAGTTTTTGGATGCCTTTACTAAAGAGATGTGGCTTTTGATAGCAGCTATTCATATTTTTGTAGGCTTTGTTATTTGGTTGATTGAAGGGGAAGATAATCCAGATCTAAGCGGAATTGGTTCCATGCTATGGTTTTTAGTCACTGTACTATTTTATGCTCACAGAGAACCAATAAGAAGACCGTTAGCTCGAATTGTGCTAGGACCATGGTTATTTGCTATTTTCATTGTGACAAATAGTTTCACAGCAAGTTTGACATCCATAACTATATCACAAGTAAAGCCATCTGTGTTAGATATTCAGACCCTTAAAGAAAGAAACTCACCAGTTGGGTGTAATGGGAATTCATTCATTGTGAATTATTTGACAGAAGTACTAAAGTTTAAGCCTGAGAACATTAGGAAAATAAATTCCATCAGTGATTACCCTGCTGCCTTTGAGAACAAGGATATAGAAGCCGCCTTCTTTGTTGGGCCGCATGCTAGAGTCTTTCTAGCGAAGTACTCATGTAAGGGACTAATCAACGCAGGGAACATTTTCCGGCTTGGTGGCTTTGGCTTTGTATATCCAAAAGGTTCTAGTTTGGCTACTGATATATCAGAGGCATTGCTGAATATGATAGAGAGTGGACAAATAAAAGAGCTGGAAAACGATATGTTGAATAAAATAAAGAATGAAGGCATAGCCAATTGTTCTTCAAAGAAAAAGGGGAAAGATAATTCATCAATTGACATTCCACCATTCGTTGGTTTATTTTCCATTTGTTCTTCTTTTGCTATTCTTGTTTTGTCATATCACACAATTTGTTTGTTGGTGAAGAAGAACTTAGAGACCTTGATATACCTCATAGTATTAACATTAATTCAATTGTGGAGAATATGGAACTGGACAACCAAATACTTCTCTCGGATCATGAGAAGAGTAAGCAGTTGCGTAGAAACAAGAAATGCAGAAGAGGATGTCAATAATGGCCAGCAAAACCCAGTGCTAGTGGTTGCTCATGCTTCATCATGA 2778 0.3585 MTFSWLINISGMGRDSSLQLKIVCLIIVLHLLACSRMQRSHCLVPQRSIMSIGAVLDLDSLMGKQQKIAMEIAVQEFNNQLSSSKLDLQIKDSHGNSAQVIAGVMDLSLSNQVLAITGTITHNEATLASELSDTIKNIPIMSLTSFTGRQELLSSRLPHFIQVGDDINLNMQCIVAIVGYLKWKKVTVIYELNNDFSSDPGRILLSLSYSLKLIGSEIDNHLAFPSLSTLLDPNTTIENELNKLKRKSNRVFLIVNSSLELANMLFEKANQIGLMEKESVWIIPNMVAGLLDSVNSSVIFNMQGVLGFKTYFMEMNEAFREFKFKFQRRFALEYPKEDNINPSIFALQAYDATWAIFEAANKSSLQGKLSLEQFSEKILSNKFHRLSRNTFSKNRPLMQSQSFNIINVIGKSYREMAFWTPTLGFSKNLLSHQLNLKEKKNTNNDHDSNGVFSTVYWPGDMQSVPKGWTHSNEERSLKIGVPSNGAFTQFVNVTHDKTMNGSSITGFSITVFKEAVKLLPYDLHYNFIPFNGSYDEMVHQVHNKALDGAVGDTGIMAYRYSLVDFSQPYIESDLHMVVTEQPEKSKTWKFLDAFTKEMWLLIAAIHIFVGFVIWLIEGEDNPDLSGIGSMLWFLVTVLFYAHREPIRRPLARIVLGPWLFAIFIVTNSFTASLTSITISQVKPSVLDIQTLKERNSPVGCNGNSFIVNYLTEVLKFKPENIRKINSISDYPAAFENKDIEAAFFVGPHARVFLAKYSCKGLINAGNIFRLGGFGFVYPKGSSLATDISEALLNMIESGQIKELENDMLNKIKNEGIANCSSKKKGKDNSSIDIPPFVGLFSICSSFAILVLSYHTICLLVKKNLETLIYLIVLTLIQLWRIWNWTTKYFSRIMRRVSSCVETRNAEEDVNNGQQNPVLVVAHASS 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00705 925 CDD GluR_Plant 477 808 - -
Trre13g00705 925 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 51 862 IPR015683 -
Trre13g00705 925 Gene3D - 470 598 - -
Trre13g00705 925 Gene3D - 675 771 - -
Trre13g00705 925 Pfam Bacterial extracellular solute-binding proteins, family 3 501 805 IPR001638 -
Trre13g00705 925 FunFam Glutamate receptor 170 340 - -
Trre13g00705 925 Gene3D - 46 167 - -
Trre13g00705 925 Gene3D - 772 804 - -
Trre13g00705 925 SUPERFAMILY Periplasmic binding protein-like II 453 805 - -
Trre13g00705 925 Gene3D - 168 341 - -
Trre13g00705 925 FunFam Glutamate receptor 587 719 - -
Trre13g00705 925 Pfam Ligand-gated ion channel 806 843 IPR001320 GO:0015276|GO:0016020
Trre13g00705 925 SMART GluR_14 476 810 IPR001320 GO:0015276|GO:0016020
Trre13g00705 925 FunFam Glutamate receptor 472 587 - -
Trre13g00705 925 SUPERFAMILY Periplasmic binding protein-like I 50 468 IPR028082 -
Trre13g00705 925 PIRSF IGluLR_plant 17 868 IPR017103 -
Trre13g00705 925 Pfam Receptor family ligand binding region 67 367 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00705 Trre-Chr13 5421401 5425887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00705 31 851 Ion Channels AT2G29120 30.000 2.32e-102 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00705 - - mtr:11432453 1307.35