Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00704 ATGGTGCAAAGAGGACACTGCTTAGTGCCACAAAGGTCCATTATAAGCATTGGTGCTGTGCTTGATTTGGATTCATTAATGGGAAAACATCAGAAGATAGCAATGGAAATTGCAGTTGAAGAGTTCAACAACCATTTGAGTTCTTCCAAACTTGATTTGCAGATAAAAGATTCACATGGAAGTTCTGCTCAAGTAATTGCAAGTGTTATGGATTTCTCAAAGACCAACCAAGTGCAAGCCATCATAGGAACTATTACACACAATGAAGCAAAACTAGCAAGTGAATTTAGTGACACCATAAACAACATTCCTATCATGTCTCTAACTTCATTTGCAAGTAAACCACAATTATCATATCCAAGATTGCCACATTTCATCCAAGTAGGGGATGATATTAACCTTAACATGCAATGCATGGCATCAATTGTAGGAAAATTCAAATGGAAAAAGGTGACAATAATTTATGAACTTAACAATAATGACTTTTCCTCTGATCCAGGAATACTACTTAGTCTCTCTTATTCTCTTAAACTTGTTGGTTCTGAGATTGTTAATCACTTAGCATTTCCTTCACTTTCAACTCTTTCAAACCCAAAATCTACAATTGAAAATGAGCTTAATAAGCTGAAAAAAGAGACTAATAGGGTTTTCTTGATTGTTCATTCTTCTTTAGAGCTATCCAACATGCTTTTTGAGAAAGCAAAACAAATAGGTTTGATGGAAAAAGGTTCTGTTTGGATTATACCAAATGAAGTTTCTAGCCTTCTTGATTCAGTTAACTCTTCGGTTATCGTCAACATGCAAGGTGTTATTGGATTTAAAACACATTTCATGGAAATGAATGAGGCTTTAAGAAAATTTAAATTCAAATTCCAAAGAAATTTTGCATTAGAATATCCTGAAGAAGATAACATTATCCCAAGTATCTTTGCATTTCAAGCATATGATCAAACTATGGCTTTTTTTGAGGCTGCAAATAAGTCATCATCACAAGGAAAATTCATCCTTGACAAAGAATTTTCAAAGAATGGACAATTGCTGCATTCACCAACCTTCAACATAATTAATGTGATAGGGAAAAGTTATAGAGAAATGGCATTTTGGTCTCCAAAACTTGGTTTTTCCAAGAACATTGTTAATGCTACCCATAATGATGATGATTTTGATGGAGTTTTCGACACGGTTTATTGGCCAGGAGACATGAAATCCATTCCTAAGGGTCACAATAAAGAGGAAAGGAATTTGACAATAGCTATACCTTCCAATGGTGCTTTTACTCAGTTTGTGAATGTGGAATATGATCATAGCAAAAATGTAACTTCCATTAATGGTTTTTCAATCAAAGTCTTTGAAGCAGCTGTGAGACGTTTACCTTATGTTTTAAATTACAATTTTTCTCCCTTTAGTGGCTCATATGATGAAATGGTTGATCAAGTCTATAATAAGACATTGGATGCTGCTGTAGGTGATACATCAATAGTGGCATATAGATATCATTTAGTTGACTTCTCACAACCTTATGTTGAATCTGGCCTTCATATGGTGGTTACTGAACAACCAGCAAAATCAAAAACATGGAAGTTTTTGGATGCCTTTACTAAAGAGATGTGGCTTATGATGATAGCTATGCATGTTTTTGTGGGATTTGTTATTTGGGTGATTGAAAGAGAAGTAAATGAAGATTTAAGGGGATTTGGGTCCATGCTTTGGTTTTTAGTCACTGTACTATTTTATGCACACAGAGAACCAATAAGAAGACCCTTAGCTAGAATTGTGCTGACACCATGGTTATTTGCTATTTTCATTGTGACAAATAGTTTCATAGCAAGTTTAACATCCATAACTATTTCACAAGTAAAGCCATCTGTGTTAGATATTCAAACCCTTAAAGAAAGAAATTCTCCAATTGGCTGTGATGGGAATTCCTTTATTGTCAAGTATCTGACTGATGTACTGCATTTCAAGCCAGAGAACATTAAGAAAATAAAATCCATGAGTGACTACCCTGCTGCCTTTGAGAACAAGGAAATAGAAGCTGCCTTCTTTGTCGCGCCTCATGCTAAAGTCTTTCTAGCAATGTACTCATGTAAGGGCTTCATCAAAGGGAATAACACTTTCAGGCTCGGTGGCTTCGGTTTTGTATTTCCAAAAGGTTCAAGTCTTGCTGCAGATATATCAGAGGCATTGTTGAATATGATAGAGAGTGGAGAAACAGAACAGCTAGAAAAAGATATGTTGAACGAGATAGAGAATGAAAGCAAAGCTAATTGTTCTTCAGAGAGCAAGGGAAAAAGCAGCACAACGATAGGCCTTTCACCTTTCGTTGGTCTGTTTTCGATCTGTTCTACTTTTGCTAGTCTTGCTTTGTCCTATCACATTATATGTTTGTTGGTGAAGAATGTAGAGACTTTGACAAGCCACATAGTGATGACATTAAGACAGTTATGGAGGATATGGAGATGGACAACCAACTTTTTTGCTCGGTGCTGTTCAAAACTCCGATCGATAATTATCAGAAGTTGCACAGAAACAAGAACTGCAGAAGAGAATGTGACAAATAGCCAGCAAATCCCAGTTGTGATTGAGCTTGTTGATAGTGTATTGGCTGCTCATGCTTCATGA 2622 0.3589 MVQRGHCLVPQRSIISIGAVLDLDSLMGKHQKIAMEIAVEEFNNHLSSSKLDLQIKDSHGSSAQVIASVMDFSKTNQVQAIIGTITHNEAKLASEFSDTINNIPIMSLTSFASKPQLSYPRLPHFIQVGDDINLNMQCMASIVGKFKWKKVTIIYELNNNDFSSDPGILLSLSYSLKLVGSEIVNHLAFPSLSTLSNPKSTIENELNKLKKETNRVFLIVHSSLELSNMLFEKAKQIGLMEKGSVWIIPNEVSSLLDSVNSSVIVNMQGVIGFKTHFMEMNEALRKFKFKFQRNFALEYPEEDNIIPSIFAFQAYDQTMAFFEAANKSSSQGKFILDKEFSKNGQLLHSPTFNIINVIGKSYREMAFWSPKLGFSKNIVNATHNDDDFDGVFDTVYWPGDMKSIPKGHNKEERNLTIAIPSNGAFTQFVNVEYDHSKNVTSINGFSIKVFEAAVRRLPYVLNYNFSPFSGSYDEMVDQVYNKTLDAAVGDTSIVAYRYHLVDFSQPYVESGLHMVVTEQPAKSKTWKFLDAFTKEMWLMMIAMHVFVGFVIWVIEREVNEDLRGFGSMLWFLVTVLFYAHREPIRRPLARIVLTPWLFAIFIVTNSFIASLTSITISQVKPSVLDIQTLKERNSPIGCDGNSFIVKYLTDVLHFKPENIKKIKSMSDYPAAFENKEIEAAFFVAPHAKVFLAMYSCKGFIKGNNTFRLGGFGFVFPKGSSLAADISEALLNMIESGETEQLEKDMLNEIENESKANCSSESKGKSSTTIGLSPFVGLFSICSTFASLALSYHIICLLVKNVETLTSHIVMTLRQLWRIWRWTTNFFARCCSKLRSIIIRSCTETRTAEENVTNSQQIPVVIELVDSVLAAHAS 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00704 873 Gene3D - 710 742 - -
Trre13g00704 873 Gene3D - 10 131 - -
Trre13g00704 873 Gene3D - 408 537 - -
Trre13g00704 873 SUPERFAMILY Periplasmic binding protein-like I 12 370 IPR028082 -
Trre13g00704 873 SMART GluR_14 414 748 IPR001320 GO:0015276|GO:0016020
Trre13g00704 873 FunFam Glutamate receptor 410 525 - -
Trre13g00704 873 Pfam Ligand-gated ion channel 744 781 IPR001320 GO:0015276|GO:0016020
Trre13g00704 873 Pfam Receptor family ligand binding region 32 342 IPR001828 -
Trre13g00704 873 FunFam Glutamate receptor 525 657 - -
Trre13g00704 873 PIRSF IGluLR_plant 331 856 IPR017103 -
Trre13g00704 873 PIRSF IGluLR_plant 2 345 IPR017103 -
Trre13g00704 873 FunFam Glutamate receptor 135 305 - -
Trre13g00704 873 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 16 802 IPR015683 -
Trre13g00704 873 CDD GluR_Plant 415 746 - -
Trre13g00704 873 Pfam Bacterial extracellular solute-binding proteins, family 3 441 743 IPR001638 -
Trre13g00704 873 Gene3D - 132 304 - -
Trre13g00704 873 SUPERFAMILY Periplasmic binding protein-like II 410 743 - -
Trre13g00704 873 Gene3D - 612 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00704 Trre-Chr13 5412417 5417623 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00704 11 817 Ion Channels AT2G29100 31.206 1.14e-113 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00704 - - mtr:11432453 1277.69