Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00703 ATGGGAAGAATTTTTTCATTGCAACTCAATATTTGTTTCATTGTTATGCACTTGTTAGCATGTTCAATGGTGCAAAGAGGACACTGCTTAGTGCCACAAAGGTCCATTATAAGCATTGGTGCTGTGCTTGATTTGGATTCATTAATGGGAAAACATCAGAAGATAGCAATGGAAATTGCAGTTGAAGAGTTCAACAACCATTTGAGTTCTTCCAAACTTGATTTGCAGATAAAAGATTCACATGGAAGTTCTGCTCAAGTAATTGCAAGTGTTATGGATTTCTCAAAGACCAACCAAGTGCAAGCCATCATAGGAACTATTACACACAATGAAGCAAAACTAGCAAGTGAATTTAGTGACACCATAAACAACATTCCTATCATGTCTCTAACTTCATTTGCAAGTAAACCACAATTATCATATCCAAGATTGCCACATTTCATCCAAGTAGGGGATGATATTAACCTTAACATGCAATGCATGGCATCAATTGTAGGAAAATTCAAATGGAAAAAGGTGACAATAATTTATGAACTTAACAATAATGACTTTTCCTCTGATCCAGGAATACTACTTAGTCTCTCTTATTCTCTTAAACTTGTTGGTTCTGAGATTGTTAATCACTTAGCATTTCCTTCACTTTCAACTCTTTCAAACCCAAAATCTACAATTGAAAATGAGCTTAATAAGCTGAAAAAAGAGACTAATAGGGTTTTCTTGATTGTTCATTCTTCTTTAGAGCTATCCAACATGCTTTTTGAGAAAGCAAAACAAATAGGTTTGATGGAAAAAGGTTCTGTTTGGATTATACCAAATGAAGTTTCTAGCCTTCTTGATTCAGTTAACTCTTCGGTTATCGTCAACATGCAAGGTGTTATTGGATTTAAAACACATTTCATGGAAATGAATGAGGCTTTAAGAAAATTTAAATTCAAATTCCAAAGAAATTTTGCATTAGAATATCCTGAAGAAGATAACATTATCCCAAGTATCTTTGCATTTCAAGCATATGATCAAACTATGGCTTTTTTTGAGGCTGCAAATAAGTCATCATCACAAGGAAAATTCATCCTTGACAAAGAATTTTCAAAGAATGGACAATTGCTGCATTCACCAACCTTCAACATAATTAATGTGATAGGGAAAAGTTATAGAGAAATGGCATTTTGGTCTCCAAAACTTGGTTTTTCCAAGAACATTGTTAATGCTACCCATAATGATGATGATTTTGATGGAGTTTTCGACACGGTTTATTGGCCAGGAGACATGAAATCCATTCCTAAGGGTCACAATAAAGAGGAAAGGAATTTGACAATAGCTATACCTTCCAATGGTGCTTTTACTCAGTTTGTGAATGTGGAATATGATCATAGCAAAAATGTAACTTCCATTAATGGTTTTTCAATCAAAGTCTTTGAAGCAGCTGTGAGACGTTTACCTTATGTTTTAAATTACAATTTTTCTCCCTTTAGTGGCTCATATGATGAAATGGTTGATCAAGTCTATAATAAGACATTGGATGCTGCTGTAGGTGATACATCAATAGTGGCATATAGATATCATTTAGTTGACTTCTCACAACCTTATGTTGAATCTGGCCTTCATATGGTGGTTACTGAACAACCAGCAAAATCAAAAACATGGAAGTTTTTGGATGCCTTTACTAAAGAGATGTGGCTTATGATGATAGCTATGCATGTTTTTGTGGGATTTGTTATTTGGGTGATTGAAAGAGAAGTAAATGAAGATTTAAGGGGATTTGGGTCCATGCTTTGGTTTTTAGTCACTGTACTATTTTATGCACACAGAGAACCAATAAGAAGACCCTTAGCTAGAATTGTGCTGACACCATGGTTATTTGCTATTTTCATTGTGACAAATAGTTTCATAGCAAGTTTAACATCCATAACTATTTCACAAGTAAAGCCATCTGTGTTAGATATTCAAACCCTTAAAGAAAGAAATTCTCCAATTGGCTGTGATGGGAATTCCTTTATTGTCAAGTATCTGACTGATGTACTGCATTTCAAGCCAGAGAACATTAAGAAAATAAAATCCATGAGTGACTACCCTGCTGCCTTTGAGAACAAGGAAATAGAAGCTGCCTTCTTTGTCGCGCCTCATGCTAAAGTCTTTCTAGCAATGTACTCATGTAAGGGCTTCATCAAAGGGAATAACACTTTCAGGCTCGGTGGCTTCGGTTTTGTATTTCCAAAAGGTTCAAGTCTTGCTGCAGATATATCAGAGGCATTGTTGAATATGATAGAGAGTGGAGAAACAGAACAGCTAGAAAAAGATATGTTGAACGAGATAGAGAATGAAAGCAAAGCTAATTGTTCTTCAGAGAGCAAGGGAAAAAGCAGCACAACGATAGGCCTTTCACCTTTCGTTGGTCTGTTTTCGATCTGTTCTACTTTTGCTAGTCTTGCTTTGTCCTATCACATTATATGTTTGTTGGTGAAGAATGTAGAGACTTTGACAAGCCACATAGTGATGACATTAAGACAGTTATGGAGGATATGGAGATGGACAACCAACTTTTTTGCTCGGTGCTGTTCAAAACTCCGATCGATAATTATCAGAAGTTGCACAGAAACAAGAACTGCAGAAGAGAATGTGACAAATAGCCAGCAAATCCCAGTTGTGATTGAGCTTGTTGATAGTGTATTGGCTGCTCATGCTTCATGA 2688 0.3575 MGRIFSLQLNICFIVMHLLACSMVQRGHCLVPQRSIISIGAVLDLDSLMGKHQKIAMEIAVEEFNNHLSSSKLDLQIKDSHGSSAQVIASVMDFSKTNQVQAIIGTITHNEAKLASEFSDTINNIPIMSLTSFASKPQLSYPRLPHFIQVGDDINLNMQCMASIVGKFKWKKVTIIYELNNNDFSSDPGILLSLSYSLKLVGSEIVNHLAFPSLSTLSNPKSTIENELNKLKKETNRVFLIVHSSLELSNMLFEKAKQIGLMEKGSVWIIPNEVSSLLDSVNSSVIVNMQGVIGFKTHFMEMNEALRKFKFKFQRNFALEYPEEDNIIPSIFAFQAYDQTMAFFEAANKSSSQGKFILDKEFSKNGQLLHSPTFNIINVIGKSYREMAFWSPKLGFSKNIVNATHNDDDFDGVFDTVYWPGDMKSIPKGHNKEERNLTIAIPSNGAFTQFVNVEYDHSKNVTSINGFSIKVFEAAVRRLPYVLNYNFSPFSGSYDEMVDQVYNKTLDAAVGDTSIVAYRYHLVDFSQPYVESGLHMVVTEQPAKSKTWKFLDAFTKEMWLMMIAMHVFVGFVIWVIEREVNEDLRGFGSMLWFLVTVLFYAHREPIRRPLARIVLTPWLFAIFIVTNSFIASLTSITISQVKPSVLDIQTLKERNSPIGCDGNSFIVKYLTDVLHFKPENIKKIKSMSDYPAAFENKEIEAAFFVAPHAKVFLAMYSCKGFIKGNNTFRLGGFGFVFPKGSSLAADISEALLNMIESGETEQLEKDMLNEIENESKANCSSESKGKSSTTIGLSPFVGLFSICSTFASLALSYHIICLLVKNVETLTSHIVMTLRQLWRIWRWTTNFFARCCSKLRSIIIRSCTETRTAEENVTNSQQIPVVIELVDSVLAAHAS 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00703 895 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 824 IPR015683 -
Trre13g00703 895 FunFam Glutamate receptor 157 327 - -
Trre13g00703 895 Gene3D - 32 153 - -
Trre13g00703 895 SMART GluR_14 436 770 IPR001320 GO:0015276|GO:0016020
Trre13g00703 895 CDD GluR_Plant 437 768 - -
Trre13g00703 895 SUPERFAMILY Periplasmic binding protein-like II 432 765 - -
Trre13g00703 895 PIRSF IGluLR_plant 354 878 IPR017103 -
Trre13g00703 895 PIRSF IGluLR_plant 4 367 IPR017103 -
Trre13g00703 895 Gene3D - 430 559 - -
Trre13g00703 895 Pfam Bacterial extracellular solute-binding proteins, family 3 463 765 IPR001638 -
Trre13g00703 895 FunFam Glutamate receptor 432 547 - -
Trre13g00703 895 Pfam Ligand-gated ion channel 766 803 IPR001320 GO:0015276|GO:0016020
Trre13g00703 895 Gene3D - 154 326 - -
Trre13g00703 895 Pfam Receptor family ligand binding region 54 364 IPR001828 -
Trre13g00703 895 FunFam Glutamate receptor 547 679 - -
Trre13g00703 895 SUPERFAMILY Periplasmic binding protein-like I 33 392 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00703 Trre-Chr13 5412417 5417689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00703 33 839 Ion Channels AT2G29100 31.206 1.90e-113 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00703 - - mtr:11432453 1294.64