Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00701 ATGGAAGAAGAAGAAAACAATACCAGAACCTGTAGCTCCACCCCAATAATGGATCCAAAAACCGGGTTCAACTCAATTTCCAGAACCTTCCAAACTCTAAGACCCCCACTAAATCTTCCTCCACCCCACGCCACAATCTCCGCCGCAACCTACACTCTCTCCCTCCACCACAAATCCCCATTCTCCTCCTCCTCCATTTTCCTTATCGACTCAACCACATCTCACCAACTATCTTACTCCATTTTCATCCAACGCTCAAAAACCCTCGCCAAAAACCTCACTCTCCGCGGACTCACCAAACACCACACCGCATTGATACTTTCCCCTAACATTTTCCAAGTTCCAATCCTCTACTTCGCATTACTCTCCATCGGCGTCATCGTTTCACCCGCAAATCCAATTTCATCTCCTTCAGATGTTTCTCATTTCATAAATCTCTCAAAACCTGTAATCGCTTTTACGACGTCGTTTTATGGAAAGCTTCCCAAACTACCTCTCGGAACGATTCTCATCGACTCGCCCGAGTTCGACTCACTCACCACGGAAGAAGCTAAAGATAATACTTCGACTGCAGCGTTACCGGAGGTGAGTCAATCTGACGTGGCGGTGATTCTATACTCATCGGGGACTACAGGGAAATCGAAAGGCGTAATGCTTACACATCGGAATTTGACGGCGGCGGTGGCGGCGCATGACGCTGTTCGGATTACGAAAGAGAGTCCTGCGGTGTGTTTGCTTACAGTACCACTTTTTCATGTGTATGGTTTTACATTCCTGTTGAAATGTGTGGCTATGATGGAAACTGTTGTGGTGATGGAGAGATTTGGATTGGGGAAAATGTTGAGTGTTTTGGAGAGGTTTCGAGTGAGTAATCTTGTGGTGGCACCGCCGGTGGTGGTGGCAATGAGTAAAGAGGGTGCAACGGAAGGGTATGATTTGTCGTCGTTGAAAAATGTTACTTGTGGCGGTGCTCCGTTGGGAAAAGATAATTTTGATGCTTTCAAAGCAAAATTCAGTCAAGTATCCATTATTCAGGGATATGGTTTAACTGAATCATCAGCCGGTGTTATCCGAGTAGTAGGTCCTGAGGAAGCTAGCCGGGCAGGAACTACGGGTAGGCTGGCTTCAGGGGTGGTAGCTAAAATAGTGAACCCCAACACAGGAGAGGCAATGTCTCCAGGTGAAGAAGGCGAACTTTGGGTTAGAGGACCTCCAATTATGAAAGGTTATGTTGGAGATCCAGTGGCAACTTCTGACACTATAGTGGATGGATGGTTGAGAACTGGAGATATTTGCTATTTTGACAATGAAGGTTTCGTGTATGTTGTAGACAGGATGAAAGAATTGATCAAATATAAAGGCTACCAGGTACCTCCTGCAGAGCTGGAACAACTACTCCAGTCTCACCCAGAGATAAAAGATGCTGCAGTTATTCCATACCCTGATGAGGATGCTGGTCAGGTTCCCCTAGCTTTTGTGATAAGGCAACCTCAAAGCTCAATGGGTGAAGCAGAAATAATAGATTTTGTAGCCAAAAGGGTTGCACCATACAAGAAGATAAGGCATGTGGTATTTGCCAATTCCATACCAAAGAATGCAGCAGGAAAGATACTAAGGAAGGACTTGTTGAATAAAATTCTCCATCAACGAACTTTCGCTAGGTTATAA 1668 0.4544 MEEEENNTRTCSSTPIMDPKTGFNSISRTFQTLRPPLNLPPPHATISAATYTLSLHHKSPFSSSSIFLIDSTTSHQLSYSIFIQRSKTLAKNLTLRGLTKHHTALILSPNIFQVPILYFALLSIGVIVSPANPISSPSDVSHFINLSKPVIAFTTSFYGKLPKLPLGTILIDSPEFDSLTTEEAKDNTSTAALPEVSQSDVAVILYSSGTTGKSKGVMLTHRNLTAAVAAHDAVRITKESPAVCLLTVPLFHVYGFTFLLKCVAMMETVVVMERFGLGKMLSVLERFRVSNLVVAPPVVVAMSKEGATEGYDLSSLKNVTCGGAPLGKDNFDAFKAKFSQVSIIQGYGLTESSAGVIRVVGPEEASRAGTTGRLASGVVAKIVNPNTGEAMSPGEEGELWVRGPPIMKGYVGDPVATSDTIVDGWLRTGDICYFDNEGFVYVVDRMKELIKYKGYQVPPAELEQLLQSHPEIKDAAVIPYPDEDAGQVPLAFVIRQPQSSMGEAEIIDFVAKRVAPYKKIRHVVFANSIPKNAAGKILRKDLLNKILHQRTFARL 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00701 555 MobiDBLite consensus disorder prediction 1 20 - -
Trre13g00701 555 Pfam AMP-binding enzyme 66 452 IPR000873 -
Trre13g00701 555 FunFam 4-coumarate--CoA ligase 2 448 549 - -
Trre13g00701 555 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 28 544 - -
Trre13g00701 555 ProSitePatterns Putative AMP-binding domain signature. 204 215 IPR020845 -
Trre13g00701 555 Gene3D - 448 549 IPR045851 -
Trre13g00701 555 CDD 4CL 57 542 - -
Trre13g00701 555 Pfam AMP-binding enzyme C-terminal domain 461 536 IPR025110 -
Trre13g00701 555 Gene3D - 40 447 IPR042099 -
Trre13g00701 555 SUPERFAMILY Acetyl-CoA synthetase-like 65 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00701 Trre-Chr13 5405240 5407871 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00701 8 542 Monolignol Biosynthesis Gene Families AT5G63380 49.367 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00701 K01904 - gmx:100801143 662.529