Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00700 ATGGAAGAAGAAGAAAACAATACCAGAACCTGTAGCTCCACCCCAATAATGGATCCAAAAACCGGGTTCAACTCAATTTCCAGAACCTTCCAAACTCTAAGACCCCCACTAAATCTTCCTCCACCCCACGCCACAATCTCCGCCGCAACCTACACTCTCTCCCTCCACCACAAATCCCCATTCTCCTCCTCCTCCATTTTCCTTATCGACTCAACCACATCTCACCAACTATCTTACTCCATTTTCATCCAACGCTCAAAAACCCTCGCCAAAAACCTCACTCTCCGCGGACTCACCAAACACCACACCGCATTGATACTTTCCCCTAACATTTTCCAAGTTCCAATCCTCTACTTCGCATTACTCTCCATCGGCGTCATCGTTTCACCCGCAAATCCAATTTCATCTCCTTCAGATGTTTCTCATTTCATAAATCTCTCAAAACCTGTAATCGCTTTTACGACGTCGTTTTATGGAAAGCTTCCCAAACTACCTCTCGGAACGATTCTCATCGACTCGCCCGAGTTCGACTCACTCACCACGGAAGAAGCTAAAGATAATACTTCGACTGCAGCGTTACCGGAGGTGAGTCAATCTGACGTGGCGGTGATTCTATACTCATCGGGGACTACAGGGAAATCGAAAGGCGTAATGCTTACACATCGGAATTTGACGGCGGCGGTGGCGGCGCATGACGCTGTTCGGATTACGAAAGAGAGTCCTGCGGTGTGTTTGCTTACAGTACCACTTTTTCATGTGTATGGTTTTACATTCCTGTTGAAATGTGTGGCTATGATGGAAACTGTTGTGGTGATGGAGAGATTTGGATTGGGGAAAATGTTGAGTGTTTTGGAGAGGTTTCGAGTGAGTAATCTTGTGGTGGCACCGCCGGTGGTGGTGGCAATGAGTAAAGAGGGTGCAACGGAAGGGTATGATTTGTCGTCGTTGAAAAATGTTACTTGTGGCGGTGCTCCGTTGGGAAAAGATAATTTTGATGCTTTCAAAGCAAAATTCAGTCAAGTATCCATTATTCAGGGATATGGTTTAACTGAATCATCAGCCGGTGTTATCCGAGTAGTAGGTCCTGAGGAAGCTAGCCGGGCAGGAACTACGGGTAGGCTGGCTTCAGGGGTGGTAGCTAAAATAGTGAACCCCAACACAGGAGAGGCAATGTCTCCAGGTTATGTTGGAGATCCAGTGGCAACTTCTGACACTATAGTGGATGGATGGTTGAGAACTGGAGATATTTGCTATTTTGACAATGAAGGTTTCGTGTATGTTGTAGACAGGATGAAAGAATTGATCAAATATAAAGGCTACCAGGTACCTCCTGCAGAGCTGGAACAACTACTCCAGTCTCACCCAGAGATAAAAGATGCTGCAGTTATTCCATACCCTGATGAGGATGCTGGTCAGGTTCCCCTAGCTTTTGTGATAAGGCAACCTCAAAGCTCAATGGGTGAAGCAGAAATAATAGATTTTGTAGCCAAAAGGGTTGCACCATACAAGAAGATAAGGCATGTGGTATTTGCCAATTCCATACCAAAGAATGCAGCAGGAAAGATACTAAGGAAGGACTTGTTGAATAAAATTCTCCATCAACGAACTTTCGCTAGGTTATAA 1623 0.4547 MEEEENNTRTCSSTPIMDPKTGFNSISRTFQTLRPPLNLPPPHATISAATYTLSLHHKSPFSSSSIFLIDSTTSHQLSYSIFIQRSKTLAKNLTLRGLTKHHTALILSPNIFQVPILYFALLSIGVIVSPANPISSPSDVSHFINLSKPVIAFTTSFYGKLPKLPLGTILIDSPEFDSLTTEEAKDNTSTAALPEVSQSDVAVILYSSGTTGKSKGVMLTHRNLTAAVAAHDAVRITKESPAVCLLTVPLFHVYGFTFLLKCVAMMETVVVMERFGLGKMLSVLERFRVSNLVVAPPVVVAMSKEGATEGYDLSSLKNVTCGGAPLGKDNFDAFKAKFSQVSIIQGYGLTESSAGVIRVVGPEEASRAGTTGRLASGVVAKIVNPNTGEAMSPGYVGDPVATSDTIVDGWLRTGDICYFDNEGFVYVVDRMKELIKYKGYQVPPAELEQLLQSHPEIKDAAVIPYPDEDAGQVPLAFVIRQPQSSMGEAEIIDFVAKRVAPYKKIRHVVFANSIPKNAAGKILRKDLLNKILHQRTFARL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00700 540 Pfam AMP-binding enzyme 66 437 IPR000873 -
Trre13g00700 540 MobiDBLite consensus disorder prediction 1 20 - -
Trre13g00700 540 ProSitePatterns Putative AMP-binding domain signature. 204 215 IPR020845 -
Trre13g00700 540 FunFam 4-coumarate--CoA ligase 2 433 534 - -
Trre13g00700 540 SUPERFAMILY Acetyl-CoA synthetase-like 65 531 - -
Trre13g00700 540 Gene3D - 40 432 IPR042099 -
Trre13g00700 540 Pfam AMP-binding enzyme C-terminal domain 446 521 IPR025110 -
Trre13g00700 540 Gene3D - 433 534 IPR045851 -
Trre13g00700 540 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 28 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00700 Trre-Chr13 5405240 5407871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00700 8 527 Monolignol Biosynthesis Gene Families AT5G63380 47.378 5.32e-175 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00700 K01904 - gmx:100801143 631.328