Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00690 ATGACATATTTTCATCTTAATCTTATTGTTCTTTCTTTTTTTTTCTTCATTCATAGTACTCATGAGTTACAATTTGCTCAAACACAAGTTCTGTTACAGTTAAGAAAGTATCTTGAATACCCTACCTCTCTGCAAGTTTTTGAAAATTACAATTTAGACCTTTGTAGCATTCCTCAATCTCAACATGTTAGTATTAAATGTGAGGGTAATTCAGTAACTGAGCTCAAAATCATAGGAGACAATCATAAACATGCAAAGGTTTCTAAATTCAATGGTTTTGCAGTTCCAAATCAAACACTATCTAAAAGTTTCTCTATTGATTCTTTTGTCACAACATTAACAAGGTTAACAAGTTTAAAGGTACTTAGTTTGGTTTCTTTAGGTATATGGGGCCCACTTCCTGATAAGATTCATAGGTTATCATTGCTTGAAGTTTTGGATTTGAGTTCAAATTTCTTATTTGGTTTTATTCCACCAAAGATAGGTACATTGGTTAATCTTCAAATATTAACACTTGATGGAAATTATTTTAATGCAACAATGCCTAATGTTTTTGAATCTTTGTCTAATTTAACTATCTTGAGTATGAAAAATAATCACTTAAAGGGTTCATTTCCTTTTTCATTATGCAAAATTAAATCTCTTACTGATATTTCATTTTCACATAATGAATTATATGGTGCATTGCCTAATCTCACTGCGCTTTCGAGGTTACGTGTGTTGGATTTAAGAGAGAATAGTTTTGATTCTGAGTTACCGTTGATGCCGAAATCAGTAGTCACGGTATTGTTAAGTAAAAACTCGTTATCCGGCGAGATTCCTAGTGAGTTTGGTGAATTGAATCAGCTTCAACATCTTGATCTTTCGTATAATCGGCTTACCGGGGTGCCCCCGTCTTCGTTGTTTTCTTTGGCAAACATTAGTTACTTGAATTTAGCAAATAATGATCTAAGTGGTTCAATTCCAAAGAAACTAAAATGTGGAAGCAAACTTGGATTTGTGGATATTTCTAGTAACATGTTAAGTGGTTTTGTTCCTTCTTGCTTGGAAAGTACTTCTGATAGAAGAGTTGTTAGATTTAGTGGAAATTGTTTATCTGTTAATTTTCAACCTCAGAATCAGAAGAATAGTTCTTATTGTGAAGAATCAAGTTCAAGAATGATGAAATTTTGGAGATGGGAACTTGATGCTGCAATTGCTATCATTGTTGTGGTTTTGCTTTTGCTTTTAGCTTTTGGAGTTTTCTTTTACAGAAAGTTTCATTCAAGAGAGATATATAGACATGAGATGTTACCAAAGATTGTTCAAGATAATTCAACAACAGGAGTTTCCTCTGAATTCCTTGCTAGTGCAAGATATATTTCTCAAACAATGAAGCTAGGGACACAAGCTACTCCAAGTAGTAGACACTTTTCCATTGAAGAATTGAAGGAAATCACAAGAAACTTTGATTTGTCAACTTATATTGGTGAAGGATCCATAGGAAAGCTTTACAAAGGCAAACTAGAGAATGGTTCTTATGTGATGATAAGATCATTGGCTTTGAGAAAGAAATTCTCAATACAAAATCTCAAAGCTAGGTTGGATTTACTGTCAAAGCTTCACCATCCAAATTTGGTTAGTCTCTTAGGTCATTGTATTGATGGTGGTAGTGGAAAAGATGGTGCTAGTAACCACAAGCTTCATCTTGTGTACGAGTATGTGCAAAATGGCGATTATCGTACACATTTGTCAGAATTTTCGTCGGATAAGGCGCTAAAATGGTCTGATAGACTGGCAATTTTAATTGGAGTTGCCAAGGCAGTGCATTTTTTACATACTGGAATTATACCAGCATGTTTTAGAAACCAATTAAAGACAAACAATGTCTTACTTCATGAACACCGATTTCCCAAACTAAGCGACTATGGTATGTCCTTGATCGCCGAAGAGATCGAAAACATTGAGATAAAGGGTGTGATTCCAAAATCATGCCAAAGGGAAGAATTAGAGGATGATGTTTACAATTTTGGTTTCATATTGTTTGAATCACTTGCTGGACCCATAGCAAGTGAGAAAGGAGAAGCATTCTTTCTTAATGAAAGGGCATCGTTTGATAGTCATGATGGTAGAAAAAGAATAGTAGATCCAGTAGTGTTGACAAGTTGCTGTCAAGAGTCTTTATCAATTGTAATATCTATCACAACCAAATGCATATCTCCACAATCATCATCTCGTCCTTCTTTCGAAGATGTTCTCTGGAATTTACAATATGCAGCTCAAGTTCAAGCCACAGCAGATGCAGATTCTATATCCTAG 2298 0.3438 MTYFHLNLIVLSFFFFIHSTHELQFAQTQVLLQLRKYLEYPTSLQVFENYNLDLCSIPQSQHVSIKCEGNSVTELKIIGDNHKHAKVSKFNGFAVPNQTLSKSFSIDSFVTTLTRLTSLKVLSLVSLGIWGPLPDKIHRLSLLEVLDLSSNFLFGFIPPKIGTLVNLQILTLDGNYFNATMPNVFESLSNLTILSMKNNHLKGSFPFSLCKIKSLTDISFSHNELYGALPNLTALSRLRVLDLRENSFDSELPLMPKSVVTVLLSKNSLSGEIPSEFGELNQLQHLDLSYNRLTGVPPSSLFSLANISYLNLANNDLSGSIPKKLKCGSKLGFVDISSNMLSGFVPSCLESTSDRRVVRFSGNCLSVNFQPQNQKNSSYCEESSSRMMKFWRWELDAAIAIIVVVLLLLLAFGVFFYRKFHSREIYRHEMLPKIVQDNSTTGVSSEFLASARYISQTMKLGTQATPSSRHFSIEELKEITRNFDLSTYIGEGSIGKLYKGKLENGSYVMIRSLALRKKFSIQNLKARLDLLSKLHHPNLVSLLGHCIDGGSGKDGASNHKLHLVYEYVQNGDYRTHLSEFSSDKALKWSDRLAILIGVAKAVHFLHTGIIPACFRNQLKTNNVLLHEHRFPKLSDYGMSLIAEEIENIEIKGVIPKSCQREELEDDVYNFGFILFESLAGPIASEKGEAFFLNERASFDSHDGRKRIVDPVVLTSCCQESLSIVISITTKCISPQSSSRPSFEDVLWNLQYAAQVQATADADSIS 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00690 765 Gene3D Ribonuclease Inhibitor 256 388 IPR032675 -
Trre13g00690 765 SMART LRR_typ_2 164 187 IPR003591 -
Trre13g00690 765 SMART LRR_typ_2 188 222 IPR003591 -
Trre13g00690 765 SMART LRR_typ_2 280 303 IPR003591 -
Trre13g00690 765 SMART LRR_typ_2 235 258 IPR003591 -
Trre13g00690 765 SMART LRR_typ_2 140 162 IPR003591 -
Trre13g00690 765 Gene3D Ribonuclease Inhibitor 161 255 IPR032675 -
Trre13g00690 765 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 259 385 - -
Trre13g00690 765 ProSiteProfiles Protein kinase domain profile. 483 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00690 765 Gene3D Phosphorylase Kinase; domain 1 444 567 - -
Trre13g00690 765 PRINTS Leucine-rich repeat signature 283 296 - -
Trre13g00690 765 PRINTS Leucine-rich repeat signature 304 317 - -
Trre13g00690 765 Gene3D Ribonuclease Inhibitor 26 160 IPR032675 -
Trre13g00690 765 Pfam Protein tyrosine and serine/threonine kinase 485 747 IPR001245 GO:0004672|GO:0006468
Trre13g00690 765 SUPERFAMILY L domain-like 113 366 - -
Trre13g00690 765 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 446 567 - -
Trre13g00690 765 ProSiteProfiles Leucine-rich repeat profile. 282 303 IPR001611 GO:0005515
Trre13g00690 765 SUPERFAMILY Protein kinase-like (PK-like) 463 749 IPR011009 -
Trre13g00690 765 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 48 380 - -
Trre13g00690 765 Pfam Leucine Rich Repeat 143 160 IPR001611 GO:0005515
Trre13g00690 765 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 568 765 - -
Trre13g00690 765 Pfam Leucine rich repeat 166 225 IPR001611 GO:0005515
Trre13g00690 765 Pfam Leucine rich repeat 260 317 IPR001611 GO:0005515
Trre13g00690 765 Gene3D Transferase(Phosphotransferase) domain 1 568 763 - -
Trre13g00690 765 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 24 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00690 Trre-Chr13 5332700 5336569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00690 6 717 Miscellaneous Gene Families AT5G14210 54.972 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Trre13g00690 PK_Tyr_Ser-Thr 9.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00690 - - gmx:100813412 1127.08