Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00683 ATGGGCACAGAAGAAATGATGATTACATTCCACATGAAAACTTTGGTCATTTTTCTTTGCCTCATTCTCTCTTCATTAGGTGAAAACTTGTTAACTTGTGAGACAACATCACCACATGATTCTATCTACCATTGCAATGAAAATGATTCACAAAATCATCATTGTGAAACATTTGCACTCTTTTTCACAAACTCTCACTATTCCTCTCTCTCAAACCTTACCTTATACTTAGGACTCAACAAGTTTATCTTAGCAGAAACCAATGGTTTCTCTGCAGAAACTGAGTTTCTTCCATATAACCATCCTCTTCTTATACCAATTGATTGCAAATGCAAAAAAAGTGGTTTTTTTCAAGCTGAGTTAACAAAAACTACTATCAAAGGAGAAAATTTCTATGACATTTCTCAATCACTTGAAGGCTTAACAACTTGTAAGGCTATCAAAGATAACAACATTGGTGTCTCACCTTGGAACCTTGAATCTAAACTCAACTTGATTGTCCCTTTGAAATGTGCTTGCCCTTTTTCTTCTTTTGTTATACCAAAACCAAAATTTCTTCTTTCTTATCCTATAATTGAAAATGATACAATTTCAAATTTGGCCTTAAAGTTCAATATTACAAAGGAAGCTATTGTTAGTTCTAATAGCTTTTTATCATCATCATCAGAAGTTCTTAGAACTAGAAGCTTAGAACCATTTACCTCTATACTAATTCCATTGAATGAGAAACCTTTCTTTTTTCTTGATCCTTTAGTTAAACCAAAACAACCCAATTCAGATTTTCCAAGAACAAACAATATTTCAATAAATAGTCCACACAAGAAAAAAACAATGAGAAAGAGTGAACTTTATATTGGCCTAATTGGTGTTGCAATTGGTGCTTTCTTTGCTTTAGTGGTAACTTTTTTCTTTATGTGGTTGAAGCAAAAGAAGGTGGAAGAAAATTCATGCAAAGAAAGAGATTTGGAGCTACAACATCTAAATCAAAGTGTGAGAACTACAAGTGATAAGAAAGTTTCATTTGAAGGGTCACAAGATACACTTGATAGTAAAATCGTCGATGCAATGCCGCGTAAGATGTTGCTTGAGACATACACAATTGAAGATTTGAGAAAAGCAACTGAGGATTTTAGTTCAAATTGTCACATTGATGGATCAGTTTTTCATGGTTGTTTAAATGGGAAGAACATGGCAATCAAAAGAGTAAAAACCGAAATGGTGTCGAAATTAGATCTTGGCCTTTTTCTTGATGCAAATCATCATCATCCAAACATAATTAACCTTCTTGGAACAAGTATTTCAGAAGGGTCATCAGATTCAGAATCTTTTTTGGTTTTTGAGTATGCTAAAAATGGTTCATTGAAAGATTGGCTTCATGGTGGCTTGGCCATCAAGAATCAATTCATAGCTTCTTGCTATTGTTTCTTGAATTGGGATCAAAGGCTTAGGATTTGTCTTGATGTGGCTAGTGCTTTGGATTACATGCACAATGTTATGATACCAAGTTATGTGCATAGAAATGTGAAGAGTAGGAACATCTTTTTAGATGAAGAATTTGGTGCTAAGATAGGTAATTTTGGTATGGCAAGTTTTGTTGAGAATGAAACTGAGGATTCACAATTTTATTCAACTAATTATGCTACTTGGAGTATTGGTTATTTGGCACCTGAATATGTTCATCAAGGTATAGTTTCAACAAGCATTGATATATTTGCTTATGGTGTTGTTTTGTTAGAAATTTTATCTGGTCAAACACCTATAAGTGGATCAAGTGATAGAGGTGAAGGAAGTGTTTGGCTTAGTGATAAAATAAAAACTACTTTGATTTCAGAAAATAATGTGAATGAGTTGCTAAGAGAATGGATTGATAGTGCATTAGGGGATAATTACTCATTTGATGCAGCTTTGAAAGTGGCTAATATTGCAAGAGCTTGTGTAGAGGAAGATTGTTCTTTGAGGCCTAATGCAAGAGAGATTGTTGAGAAGATTTCAAGATTGGTAGAGGAAATACCAAATGAGGAACATCAAATTTTGATGAGTGAAAGCTCTTGCAAACCTCTTGTGGAAGCAATATGTGAAAAATCCATCAAGTGA 2094 0.3367 MGTEEMMITFHMKTLVIFLCLILSSLGENLLTCETTSPHDSIYHCNENDSQNHHCETFALFFTNSHYSSLSNLTLYLGLNKFILAETNGFSAETEFLPYNHPLLIPIDCKCKKSGFFQAELTKTTIKGENFYDISQSLEGLTTCKAIKDNNIGVSPWNLESKLNLIVPLKCACPFSSFVIPKPKFLLSYPIIENDTISNLALKFNITKEAIVSSNSFLSSSSEVLRTRSLEPFTSILIPLNEKPFFFLDPLVKPKQPNSDFPRTNNISINSPHKKKTMRKSELYIGLIGVAIGAFFALVVTFFFMWLKQKKVEENSCKERDLELQHLNQSVRTTSDKKVSFEGSQDTLDSKIVDAMPRKMLLETYTIEDLRKATEDFSSNCHIDGSVFHGCLNGKNMAIKRVKTEMVSKLDLGLFLDANHHHPNIINLLGTSISEGSSDSESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLNWDQRLRICLDVASALDYMHNVMIPSYVHRNVKSRNIFLDEEFGAKIGNFGMASFVENETEDSQFYSTNYATWSIGYLAPEYVHQGIVSTSIDIFAYGVVLLEILSGQTPISGSSDRGEGSVWLSDKIKTTLISENNVNELLREWIDSALGDNYSFDAALKVANIARACVEEDCSLRPNAREIVEKISRLVEEIPNEEHQILMSESSCKPLVEAICEKSIK 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00683 697 Pfam Protein kinase domain 385 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00683 697 FunFam PTI1-like tyrosine-protein kinase 3 449 677 - -
Trre13g00683 697 Pfam LysM domain 192 239 IPR018392 -
Trre13g00683 697 ProSiteProfiles Protein kinase domain profile. 350 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00683 697 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 18 671 - -
Trre13g00683 697 SUPERFAMILY Protein kinase-like (PK-like) 359 661 IPR011009 -
Trre13g00683 697 Gene3D Phosphorylase Kinase; domain 1 351 448 - -
Trre13g00683 697 Gene3D Transferase(Phosphotransferase) domain 1 449 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00683 Trre-Chr13 5298810 5300903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00683 43 689 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 39.852 8.90e-142 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre13g00683 Pkinase 2.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00683 - - tpra:123891373 1301.19