Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00678 ATGGCTGGGCAATCAAATCATGAACTCTCACTCTTTTCAGCAGAGGAGCTTGAGTTCATCGCTGAGGACGAGATTGTGGACATTGTGCCTAATCTCAAAATGGATCCTCTCTGCCTCATTTCTGGAGATTTTGGTCCATTTACGCCACAGATTGTTACTCAAGTACCACTTTGGTTGGCAATTGCTCTCAAGAAGAGAGGCAAGTGTTCCATTGTCCCTCCCCAATGGATGTCTGTTGAGAAGTTGACTCAAGTGTTGGAGGCAGAGCGATACTCTCAAGAGATGTCCGAGCACTTGCCATTTCATTATGTAGAAATCTCAAGACTTCTTTTTGATCATGCACGAGACAACATCTCTGATGCATACATGGTGAGGTCTTTAATTGAGGACATCAGAGACGTAAGATTTCATAAAGTTGAAACTGACTTGGAGGCATTCAATGGTCGTACAATAGCTGTGAAGATTAAAAACTTATCTGCAATGGAAGTGAATATTGTTCGCCCATTTATTGGAAGAGCTTTACAGGCATTTTACAAGCATGATAGTCCAGATTTGATCCCAGACCCGGAACGAGTTTCTGATAGACGTCCGCAAGCTGCTCCCAATGCCCCAAGAAGGCAACTACGGAGATAA 633 0.4344 MAGQSNHELSLFSAEELEFIAEDEIVDIVPNLKMDPLCLISGDFGPFTPQIVTQVPLWLAIALKKRGKCSIVPPQWMSVEKLTQVLEAERYSQEMSEHLPFHYVEISRLLFDHARDNISDAYMVRSLIEDIRDVRFHKVETDLEAFNGRTIAVKIKNLSAMEVNIVRPFIGRALQAFYKHDSPDLIPDPERVSDRRPQAAPNAPRRQLRR 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00678 210 Pfam GINS complex protein 53 162 IPR021151 -
Trre13g00678 210 PANTHER DNA REPLICATION COMPLEX GINS PROTEIN PSF2 7 198 IPR007257 GO:0005634|GO:0006260
Trre13g00678 210 FunFam DNA replication complex GINS protein PSF2 12 77 - -
Trre13g00678 210 Gene3D - 78 185 - -
Trre13g00678 210 CDD GINS_B_Psf2 13 74 - -
Trre13g00678 210 FunFam DNA replication complex GINS protein PSF2 78 193 - -
Trre13g00678 210 SUPERFAMILY PriA/YqbF domain 12 72 - -
Trre13g00678 210 Gene3D - 12 77 - -
Trre13g00678 210 MobiDBLite consensus disorder prediction 185 210 - -
Trre13g00678 210 SUPERFAMILY GINS helical bundle-like 73 181 IPR036224 -
Trre13g00678 210 PIRSF GINS_PSF2 2 210 IPR007257 GO:0005634|GO:0006260
Trre13g00678 210 CDD GINS_A_psf2 66 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00678 Trre-Chr13 5273550 5276400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00678 1 146 Core DNA Replication Machinery Family AT3G12530 67.808 3.60e-71 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00678 K10733 - gmx:100780528 349.747