Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00677 ATGCCGGAAGAAACAACTTCGATTGATTACGCCATGGAAGCAGCATCTGGACCCCACTTCTCCGGCCTTCGACTCGACGCCCGACTTTCATCATCTTCCCCAACCTCTTCTCTCGCTCCCAATTCAACCCTAACCTCCGATTCTCTTCTCAATCAACCCTTCGTTATTGGTGTTTCCGGTGGAACTGCTTCTGGAAAAACCACCGTTTGTGATATGATCATTCAACAGCTTCACGATCATCGCGTAGTTCTTGTTAATCAGGATTCATTTTATCGCGGGTTGAAACCGGAAGAGTTGGAACATGTTCACGAGTACAATTTTGATCACCCTGATGCTTTTGACACGGAGCAACTGTTAGAGTGTATGAAGAAGCTCATCAGTGGCCAAAGAGTCAAAATTCCCATTTACGACTTTAAGAAGCACCAACGCTCTTCTGATAGTTTTCGTCAGGTCAATGCCTCTGATGTCATTATATTGGAGGGAATTCTTGTATTCCACGATCAAGGTGTCCGTGATCTGATGAACATGAAGATCTTTGTTGACACAGATGCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGACACAGTGGAAAGAGGCAGAGACATAAACTCTGTTCTCGAAATGTATGCAAAGTTTGTTAAGCCTGCTTTTGACGACTTTGTTCTACCGTCAAAGAAATATGCTGATGTGATCATTCCTCGTGGAGGTGATAATCATGTTGCCATTGATTTGATTACACAACACATCCGCACAAAGCTTGGTCAACATGATCTATGCAAAATATATCCAAACGTATATGTCATTCAATCTACATTCCAGATAAGGGGGATGCATACATTGATTCGTGACAAAGATATATCAAAGCATGATTTTGTATTTTATTCTGATCGACTTATACGGCTGGTTGTTGAGCATGGTCTCGGTCATCTGCCTTTCACTGAAAAGCAAGTTGTCACTCCAACAGGATCTGTCTATACTGGAGTTGATTTCTGCAAGAAATTATGTGGTGTTTCAATTATTCGAAGTGGTGAGAGCATGGAAAATGCACTTCGTGCATGTTGTAAAGGCATTAAAATTGGAAAAATTCTGATTCACCGGGATGGAGACAATGGAAAACAGCTTATATATGAAAAGCTTCCTAAGGATATCTCAGAACGACATGTCTTGCTTCTGGACCCTGTTCTTGCTACAGGTAACTCTGCCAACCAAGCAATTGAATTACTCATTCAGAAAGGAGTACCAGAATCCCACATTATATTCCTGAATCTCATTTCTGCTCCTGAAGGAATCCATTGTGTTTGTAAAAGGTTCCCAGCATTGAAAATTGTCACATCTGAGATTGATGTTGCATTAAATGAAGAGTTTCGTGTTATCCCTGGATTAGGTGAATTTGGTGATCGCTACTTTGGCACTGATGATTGA 1425 0.4147 MPEETTSIDYAMEAASGPHFSGLRLDARLSSSSPTSSLAPNSTLTSDSLLNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLKPEELEHVHEYNFDHPDAFDTEQLLECMKKLISGQRVKIPIYDFKKHQRSSDSFRQVNASDVIILEGILVFHDQGVRDLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEMYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLITQHIRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDKDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKRFPALKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTDD 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00677 474 Pfam Uracil phosphoribosyltransferase 271 472 - -
Trre13g00677 474 NCBIfam uridine kinase 53 253 IPR000764 -
Trre13g00677 474 FunFam Uridine kinase 257 472 - -
Trre13g00677 474 Gene3D - 50 256 IPR027417 -
Trre13g00677 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 246 IPR027417 -
Trre13g00677 474 PRINTS Uridine kinase signature 128 143 - -
Trre13g00677 474 PRINTS Uridine kinase signature 185 195 - -
Trre13g00677 474 PRINTS Uridine kinase signature 221 234 - -
Trre13g00677 474 PRINTS Uridine kinase signature 199 210 - -
Trre13g00677 474 PRINTS Uridine kinase signature 53 70 - -
Trre13g00677 474 PRINTS Uridine kinase signature 83 94 - -
Trre13g00677 474 CDD PRTases_typeI 330 445 IPR000836 -
Trre13g00677 474 PANTHER URIDINE KINASE 36 383 - -
Trre13g00677 474 Gene3D - 257 472 IPR029057 -
Trre13g00677 474 FunFam Uridine kinase 50 256 - -
Trre13g00677 474 CDD UMPK 55 253 IPR000764 -
Trre13g00677 474 ProSiteProfiles UvrC family, homology region profile. 159 242 IPR001162 GO:0009381
Trre13g00677 474 Pfam Phosphoribulokinase / Uridine kinase family 55 241 IPR006083 GO:0005524|GO:0016301
Trre13g00677 474 SUPERFAMILY PRTase-like 256 473 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00677 Trre-Chr13 5265842 5270940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00677 1 474 PRT Gene Family AT5G40870 86.542 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00677 K00876 - gmx:100780005 884.404