Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00672 ATGTGGATGCTCTTTGTTCTTATATTGGGTTTGATAGTGGGGAGTCAATCATCCACAATTACACCTTCACTTCATGCAGAAGCAAATGCTATATTCAAGAGTGGATGGTGGGCCACATCTTATGAACGTTTCACAATTTCTAGTTATTGTAATTGGTCTAATATTATTTGCAACAAGGATGGAAGCATAAAATCAATCCACATAGATGCTCAAAATTCAGAAGTGGCTTGGGGGAATAAATTTGCAACACTCAATTTATCTTCTTTCCACAATTTAGAAAGCCTTGTTATCAAGTCAATGGGACTACATGGGACTATCCCAACAGAAATTGGTCTTCTCTCCAAGCTCATTCATCTTGATTTGTCTAACAATTCTCTTTTAGGTGAGGTACCTTCTTCACTAGGCAACCTTAGACAATTACAGTACCTAGACATCTCTTACAACGACCTTTATGGTTCCATTCCTTATGAGTTGGGATTCATTAAACCTCTCATTGCATTAAATCTATCAAACAATGGAATTGAACTTGAGATTCCTTCTTCACTAGGAAATCTCACCAAACTCACTCATCTTGATATGTCTCTCAATTTTCTTGAAATTATGATACCTACTTCACTAGGAAACCTTAGAAAATTAGAGTACCTAGACATCTCTAATAACGATATTTATGGTTCCATCCCTCCTGAGTTGTGGTTCCTGAAAAATCTCACTAAACTAAGTCTATCTAACAATAGATTCAAAGGCAGGATACTTTCTTCAATAGGAAATCTCAGCCTATTAGAGGAGCTAGACATTTCTCGCAACTACTTTGAAGGATTCATTCCTCTTGAGTTGGGTTTCCTGAAAAATCTCATTAGATTAGATCTATCTAACAATAGACTCGATAGAAACTTGCCGATTTCCCTTTCAAATCTCACACAATTATATTACCTTGACATCTCTAACAATTACCTCACTGGTTCCCTTCCATCTAACTTCAATCAATTAACTAAATTGCGAGTGTTGTTGTTAAATTACAACTACATTAGCGGAACCTTTTCGATGATCAATCTCTCTCAATTAGAAACTCTTGGTATTTCCCACAATTTACTCCGAGGTAAACTTCCTTCAATTTTTTTTGCATTGCCAGATAACGTCAAAGCTTCCATTGACCTCAGTTACAACCTCATTAGTGGTGAAATTCCTTCTGAGCTTGGACATTTTTTTCAATTTAATTTAAGCAATAATAATCTCACTGGAATGGTTCCCCAATCTCTCTGTAATGTCACTATTTTGGACATTTCCTACAATTATTTGAAGGGTCCTTTTCCAAATTGTATTGATCCTCACAGTATAATAGGGAACATGGATGTATGTACTGACATTTTACATGATCAAATCGCCTTCCAAATTCAACCTTGCAAGAAAAGTAACAAAGCAAACCACGTTGTTGTTGTTATTGTTGTTCCTATCCTTATGGTTCTAATATTAGCATTCTCACTTCTCATTTGCTTAAAACTTCGTCGTAATTCTATTAAGAACAACCATGCAAACACATCCACAACAACAAAAAATGGGGATTTGTTTTGCTTATGGAATTATGATGGGAAAATAGCATATGATGACATTATCAAAGCAACAGAAGACTTTGACATGAGATATTGCATTGGAACAGGAGCATATGGAAGTGTTTACAAGGCACAATTACCGTCTGGAAAAATTGTTGCCTTAAAAAAACTTCACGGATACGAAGCAGAGGTTCCTTCTTTCGATGAAAGTTTTAGAAATGAAGTGAGAATATTATCAGAAATAAAGCACAAGAATATTGTGAAGCTTTATGGATTCTGCTTGCACAAAAGAATCATGTTTTTGATTTATCAGTACATGGAGAAAGGAAGCTTGTTCTCTGTCTTGTATGACGACGAAGAAGCCATGGAATTCAATTGGAGAAAAAGGATTAACATTGTTAAAGGAGTTGCATTTGCTCTATCTTATCTTCATCATGATTGCAGTCCTTCGATAGTGCATCGAGATGTATCGAGTAACAATATCTTGCTAAATTCTGACTGGCAGCCTACTGTTTCTGACTTTGGCACAGCTCGACTCCTTCAATATGATTCATCCAATCGAACAATAGTTGCTGGAACAATCGGATATATCGCTCCTGAGCTTGCTTATACCATGGTTGTGAGTGAAAAGTGCGATATATACAGCTTTGGAGTGGTGGCACTAGAATGTTTAATGGGCAGGCACCCCGGTGAAATATTGTTGTCACTTCAATTAGCATCAACTCAAAGCATGAAATTATGTCAAGTATTAGACCAACGTCTTCCATTTCCAAATAATGCAATGGTTTTACTTGACATGATTCGTGTAGCCGTGGTAGCATTTGCATGCTTAAATTTCAATTCTAGCTCGCGACCAACAATGAAATGTGTGTCACAAAGTTTTCTCTCTGAGCTTAAACCATTAACCATTCCTCTGAGTGAAATTTCAATGCAGCAACTTATGAGTCAAGAGCTCAAAACATTATTTCATATTGTCAACCCATGA 2532 0.3633 MWMLFVLILGLIVGSQSSTITPSLHAEANAIFKSGWWATSYERFTISSYCNWSNIICNKDGSIKSIHIDAQNSEVAWGNKFATLNLSSFHNLESLVIKSMGLHGTIPTEIGLLSKLIHLDLSNNSLLGEVPSSLGNLRQLQYLDISYNDLYGSIPYELGFIKPLIALNLSNNGIELEIPSSLGNLTKLTHLDMSLNFLEIMIPTSLGNLRKLEYLDISNNDIYGSIPPELWFLKNLTKLSLSNNRFKGRILSSIGNLSLLEELDISRNYFEGFIPLELGFLKNLIRLDLSNNRLDRNLPISLSNLTQLYYLDISNNYLTGSLPSNFNQLTKLRVLLLNYNYISGTFSMINLSQLETLGISHNLLRGKLPSIFFALPDNVKASIDLSYNLISGEIPSELGHFFQFNLSNNNLTGMVPQSLCNVTILDISYNYLKGPFPNCIDPHSIIGNMDVCTDILHDQIAFQIQPCKKSNKANHVVVVIVVPILMVLILAFSLLICLKLRRNSIKNNHANTSTTTKNGDLFCLWNYDGKIAYDDIIKATEDFDMRYCIGTGAYGSVYKAQLPSGKIVALKKLHGYEAEVPSFDESFRNEVRILSEIKHKNIVKLYGFCLHKRIMFLIYQYMEKGSLFSVLYDDEEAMEFNWRKRINIVKGVAFALSYLHHDCSPSIVHRDVSSNNILLNSDWQPTVSDFGTARLLQYDSSNRTIVAGTIGYIAPELAYTMVVSEKCDIYSFGVVALECLMGRHPGEILLSLQLASTQSMKLCQVLDQRLPFPNNAMVLLDMIRVAVVAFACLNFNSSSRPTMKCVSQSFLSELKPLTIPLSEISMQQLMSQELKTLFHIVNP 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00672 843 ProSiteProfiles Protein kinase domain profile. 543 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00672 843 FunFam MDIS1-interacting receptor like kinase 2 622 816 - -
Trre13g00672 843 Gene3D Ribonuclease Inhibitor 27 223 IPR032675 -
Trre13g00672 843 Gene3D Transferase(Phosphotransferase) domain 1 622 818 - -
Trre13g00672 843 Pfam Protein kinase domain 549 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00672 843 FunFam Nuclear pore complex protein NUP107 23 167 - -
Trre13g00672 843 SMART LRR_typ_2 281 305 IPR003591 -
Trre13g00672 843 SMART LRR_typ_2 185 208 IPR003591 -
Trre13g00672 843 SMART LRR_typ_2 329 348 IPR003591 -
Trre13g00672 843 SMART LRR_typ_2 209 233 IPR003591 -
Trre13g00672 843 SMART LRR_typ_2 113 137 IPR003591 -
Trre13g00672 843 SMART LRR_typ_2 351 374 IPR003591 -
Trre13g00672 843 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 177 379 - -
Trre13g00672 843 SUPERFAMILY RNI-like 91 436 - -
Trre13g00672 843 Gene3D Phosphorylase Kinase; domain 1 503 621 - -
Trre13g00672 843 PRINTS Leucine-rich repeat signature 281 294 - -
Trre13g00672 843 PRINTS Leucine-rich repeat signature 116 129 - -
Trre13g00672 843 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515
Trre13g00672 843 Pfam Leucine rich repeat 307 364 IPR001611 GO:0005515
Trre13g00672 843 Pfam Leucine rich repeat 166 222 IPR001611 GO:0005515
Trre13g00672 843 ProSitePatterns Tyrosine protein kinases specific active-site signature. 667 679 IPR008266 GO:0004672|GO:0006468
Trre13g00672 843 ProSitePatterns Protein kinases ATP-binding region signature. 549 571 IPR017441 GO:0005524
Trre13g00672 843 Gene3D Ribonuclease Inhibitor 224 461 IPR032675 -
Trre13g00672 843 FunFam Leucine-rich repeat receptor protein kinase MSP1 506 621 - -
Trre13g00672 843 SUPERFAMILY Protein kinase-like (PK-like) 525 808 IPR011009 -
Trre13g00672 843 SMART LRR_sd22_2 113 139 - -
Trre13g00672 843 SMART LRR_sd22_2 233 259 - -
Trre13g00672 843 SMART LRR_sd22_2 185 217 - -
Trre13g00672 843 SMART LRR_sd22_2 281 307 - -
Trre13g00672 843 SMART LRR_sd22_2 329 353 - -
Trre13g00672 843 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 224 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00672 Trre-Chr13 5242461 5245796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00672 87 715 Receptor kinase-like Gene Family AT4G08850 38.319 7.50e-136 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g00672 Pkinase 7.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00672 - - mtr:25501173 945.266