Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00671 ATGAACTTGACAAAATATTTAGTTTCTAATTTTGTTGATAAAAAAATGTGGATGCTCTTTGTTCTTATATTGGGTTTGATAGTGGGGAGTCAATCATCCACAATTACACCTTCACTTCATGCAGAAGCAAATGCTATATTCAAGAGTGGATGGTGGGCCACATCTTATGAACGTTTCACAATTTCTAGTTATTGTAATTGGTCTAATATTATTTGCAACAAGGATGGAAGCATAAAATCAATCCACATAGATGCTCAAAATTCAGAAGTGGCTTGGGGGAATAAATTTGCAACACTCAATTTATCTTCTTTCCACAATTTAGAAAGCCTTGTTATCAAGTCAATGGGACTACATGGGACTATCCCAACAGAAATTGGTCTTCTCTCCAAGCTCATTCATCTTGATTTGTCTAACAATTCTCTTTTAGGTGAGGTACCTTCTTCACTAGGCAACCTTAGACAATTACAGTACCTAGACATCTCTTACAACGACCTTTATGGTTCCATTCCTTATGAGTTGGGATTCATTAAACCTCTCATTGCATTAAATCTATCAAACAATGGAATTGAACTTGAGATTCCTTCTTCACTAGGAAATCTCACCAAACTCACTCATCTTGATATGTCTCTCAATTTTCTTGAAATTATGATACCTACTTCACTAGGAAACCTTAGAAAATTAGAGTACCTAGACATCTCTAATAACGATATTTATGGTTCCATCCCTCCTGAGTTGTGGTTCCTGAAAAATCTCACTAAACTAAATCTATCTAACAATAGACTCGATAGAAACTTGCCGATTTCCCTTTCAAATCTCACACAATTATATTACCTTGACATCTCTAACAATTACCTCACTGGTTCCCTTCCATCTAACTTCAATCAATTAACTAAATTGCGAGTGTTGTTGTTAAATTACAACTACATTAGCGGAACCTTTTCGATGATCAATCTCTCTCAATTAGAAACTCTTGGTATTTCCCACAATTTACTCCGAGGTAAACTTCCTTCAATTTTTTTTGCATTGCCAGATAACGTCAAAGCTTCCATTGACCTCAGTTACAACCTCATTAGTGGTGAAATTCCTTCTGAGCTTGGACATTTTTTTCAATTTAATTTAAGCAATAATAATCTCACTGGAATGGTTCCCCAATCTCTCTGTAATGTCACTATTTTGGACATTTCCTACAATTATTTGAAGGGTCCTTTTCCAAATTGTATTGATCCTCACAGTATAATAGGGAACATGGATGTATGTACTGACATTTTACATGATCAAATCGCCTTCCAAATTCAACCTTGCAAGAAAAGTAACAAAGCAAACCACGTTGTTGTTGTTATTGTTGTTCCTATCCTTATGGTTCTAATATTAGCATTCTCACTTCTCATTTGCTTAAAACTTCGTCGTAATTCTATTAAGAACAACCATGCAAACACATCCACAACAACAAAAAATGGGGATTTGTTTTGCTTATGGAATTATGATGGGAAAATAGCATATGATGACATTATCAAAGCAACAGAAGACTTTGACATGAGATATTGCATTGGAACAGGAGCATATGGAAGTGTTTACAAGGCACAATTACCGTCTGGAAAAATTGTTGCCTTAAAAAAACTTCACGGATACGAAGCAGAGGTTCCTTCTTTCGATGAAAGTTTTAGAAATGAAGTGAGAATATTATCAGAAATAAAGCACAAGAATATTGTGAAGCTTTATGGATTCTGCTTGCACAAAAGAATCATGTTTTTGATTTATCAGTACATGGAGAAAGGAAGCTTGTTCTCTGTCTTGTATGACGACGAAGAAGCCATGGAATTCAATTGGAGAAAAAGGATTAACATTGTTAAAGGAGTTGCATTTGCTCTATCTTATCTTCATCATGATTGCAGTCCTTCGATAGTGCATCGAGATGTATCGAGTAACAATATCTTGCTAAATTCTGACTGGCAGCCTACTGTTTCTGACTTTGGCACAGCTCGACTCCTTCAATATGATTCATCCAATCGAACAATAGTTGCTGGAACAATCGGATATATCGCTCCTGAGCTTGCTTATACCATGGTTGTGAGTGAAAAGTGCGATATATACAGCTTTGGAGTGGTGGCACTAGAATGTTTAATGGGCAGGCACCCCGGTGAAATATTGTTGTCACTTCAATTAGCATCAACTCAAAGCATGAAATTATGTCAAGTATTAGACCAACGTCTTCCATTTCCAAATAATGCAATGGTTTTACTTGACATGATTCGTGTAGCCGTGGTAGCATTTGCATGCTTAAATTTCAATTCTAGCTCGCGACCAACAATGAAATGTGTGTCACAAAGTTTTCTCTCTGAGCTTAAACCATTAACCATTCCTCTGAGTGAAATTTCAATGCAGCAACTTATGAGTCAAGAGCTCAAAACATTATTTCATATTGTCAACCCATGA 2433 0.3596 MNLTKYLVSNFVDKKMWMLFVLILGLIVGSQSSTITPSLHAEANAIFKSGWWATSYERFTISSYCNWSNIICNKDGSIKSIHIDAQNSEVAWGNKFATLNLSSFHNLESLVIKSMGLHGTIPTEIGLLSKLIHLDLSNNSLLGEVPSSLGNLRQLQYLDISYNDLYGSIPYELGFIKPLIALNLSNNGIELEIPSSLGNLTKLTHLDMSLNFLEIMIPTSLGNLRKLEYLDISNNDIYGSIPPELWFLKNLTKLNLSNNRLDRNLPISLSNLTQLYYLDISNNYLTGSLPSNFNQLTKLRVLLLNYNYISGTFSMINLSQLETLGISHNLLRGKLPSIFFALPDNVKASIDLSYNLISGEIPSELGHFFQFNLSNNNLTGMVPQSLCNVTILDISYNYLKGPFPNCIDPHSIIGNMDVCTDILHDQIAFQIQPCKKSNKANHVVVVIVVPILMVLILAFSLLICLKLRRNSIKNNHANTSTTTKNGDLFCLWNYDGKIAYDDIIKATEDFDMRYCIGTGAYGSVYKAQLPSGKIVALKKLHGYEAEVPSFDESFRNEVRILSEIKHKNIVKLYGFCLHKRIMFLIYQYMEKGSLFSVLYDDEEAMEFNWRKRINIVKGVAFALSYLHHDCSPSIVHRDVSSNNILLNSDWQPTVSDFGTARLLQYDSSNRTIVAGTIGYIAPELAYTMVVSEKCDIYSFGVVALECLMGRHPGEILLSLQLASTQSMKLCQVLDQRLPFPNNAMVLLDMIRVAVVAFACLNFNSSSRPTMKCVSQSFLSELKPLTIPLSEISMQQLMSQELKTLFHIVNP 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00671 810 ProSitePatterns Protein kinases ATP-binding region signature. 516 538 IPR017441 GO:0005524
Trre13g00671 810 ProSitePatterns Tyrosine protein kinases specific active-site signature. 634 646 IPR008266 GO:0004672|GO:0006468
Trre13g00671 810 ProSiteProfiles Leucine-rich repeat profile. 250 273 IPR001611 GO:0005515
Trre13g00671 810 FunFam Nuclear pore complex protein NUP107 38 182 - -
Trre13g00671 810 Pfam Leucine rich repeat 250 309 IPR001611 GO:0005515
Trre13g00671 810 Pfam Leucine rich repeat 181 237 IPR001611 GO:0005515
Trre13g00671 810 Pfam Leucine rich repeat 106 165 IPR001611 GO:0005515
Trre13g00671 810 FunFam MDIS1-interacting receptor like kinase 2 589 783 - -
Trre13g00671 810 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 192 431 - -
Trre13g00671 810 SUPERFAMILY RNI-like 101 419 - -
Trre13g00671 810 Gene3D Phosphorylase Kinase; domain 1 470 588 - -
Trre13g00671 810 Pfam Protein kinase domain 516 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00671 810 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 226 778 - -
Trre13g00671 810 ProSiteProfiles Protein kinase domain profile. 510 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00671 810 SUPERFAMILY Protein kinase-like (PK-like) 492 775 IPR011009 -
Trre13g00671 810 Gene3D Ribonuclease Inhibitor 38 177 IPR032675 -
Trre13g00671 810 PRINTS Leucine-rich repeat signature 248 261 - -
Trre13g00671 810 PRINTS Leucine-rich repeat signature 131 144 - -
Trre13g00671 810 SMART LRR_typ_2 224 247 IPR003591 -
Trre13g00671 810 SMART LRR_typ_2 200 223 IPR003591 -
Trre13g00671 810 SMART LRR_typ_2 128 152 IPR003591 -
Trre13g00671 810 SMART LRR_typ_2 296 315 IPR003591 -
Trre13g00671 810 SMART LRR_typ_2 248 272 IPR003591 -
Trre13g00671 810 SMART LRR_typ_2 318 341 IPR003591 -
Trre13g00671 810 FunFam Leucine-rich repeat receptor protein kinase MSP1 473 588 - -
Trre13g00671 810 Gene3D Transferase(Phosphotransferase) domain 1 589 785 - -
Trre13g00671 810 Gene3D Ribonuclease Inhibitor 178 429 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00671 Trre-Chr13 5242461 5245841 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00671 102 682 Receptor kinase-like Gene Family AT4G08850 37.348 1.69e-126 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g00671 Pkinase 6.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00671 - - mtr:25497510 962.985