Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00670 ATGTGCTTGAAACTTCGTCATAATTCTATTAAGAACAACCATGCAAACACATCCACAACAAAAAATGGGGACATGTTTTGCTTATGGAATTATGATGGAAAAATAGCATATGATGATATTATCGAAGCAACAGAAGACTTTGACATGAGATATTGCATTGGAACAGGAGCATATGGAAGTGTTTACAAGGCACAATTACCATCTGGAAAAATTGTTGCCTTAAAAAAACTTCACGGATACGAAGCAGAGGTTCCTTCTTTTGATGAAAGTTTTCGAAATGAATATATGGAGAAAGGAAGCTTGTTCTCTGTCTTGTATGATGATGTAGAAGCCATGGAATTCAATTGGAGAAAAAGGACTAACATTGTTAAAGGAGTTGCATTTGCTCTATCTTATCTTCATCATGATTGCAGCCCTTCAATAGTGCATAGAGATGTATCGAGTAGCAATATCTTGTTAAACTCTGAGTGGCAGCCTACTGTTTCTGACTTTGGCACAGCTCGACTCCTTCAACATGATTCATCGAATCGAACGATAGTTGCTGGAACAATCGGATATATCGCTCCTGAGCTTGCTTATACCATGGTTGTGAGTGAAAAGTGTGATATATACAGCTTTGGAGTGGTGGCACTAGAATGTTTAATGGGAAGGCACCCCGGAGAAATACTGTCGTCACTTCAATTAGCATCGACTCAAAGCATGAAATTATGTCAAGTATTAGACCAACGTCTTCCATTTCCAAATAATGCAATGGTTTTACTTGACATGATTCGTGTAGCCGTGGTAGCATTTGCATGCTTAAATTTCAATCCTAGCTTGCGACCAACAATAAAATGTGTGTCACAAAGTTTTCTTTCTGAGCTTACACCATTAACCATTCCTTTGAGTGAAATTTCAATGGAGCAACTTATGAGTCAAGAGCTCAAAACATTATTTCATATTGTCAACCCATAA 954 0.3763 MCLKLRHNSIKNNHANTSTTKNGDMFCLWNYDGKIAYDDIIEATEDFDMRYCIGTGAYGSVYKAQLPSGKIVALKKLHGYEAEVPSFDESFRNEYMEKGSLFSVLYDDVEAMEFNWRKRTNIVKGVAFALSYLHHDCSPSIVHRDVSSSNILLNSEWQPTVSDFGTARLLQHDSSNRTIVAGTIGYIAPELAYTMVVSEKCDIYSFGVVALECLMGRHPGEILSSLQLASTQSMKLCQVLDQRLPFPNNAMVLLDMIRVAVVAFACLNFNPSLRPTIKCVSQSFLSELTPLTIPLSEISMEQLMSQELKTLFHIVNP 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00670 317 Gene3D Phosphorylase Kinase; domain 1 7 98 - -
Trre13g00670 317 PANTHER LEUCINE RICH REPEAT KINASE 2 13 286 - -
Trre13g00670 317 ProSiteProfiles Protein kinase domain profile. 47 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00670 317 Pfam Protein kinase domain 93 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00670 317 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Trre13g00670 317 FunFam MDIS1-interacting receptor like kinase 2 96 290 - -
Trre13g00670 317 Gene3D Transferase(Phosphotransferase) domain 1 99 290 - -
Trre13g00670 317 ProSitePatterns Tyrosine protein kinases specific active-site signature. 141 153 IPR008266 GO:0004672|GO:0006468
Trre13g00670 317 SUPERFAMILY Protein kinase-like (PK-like) 26 282 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00670 Trre-Chr13 5236116 5237593 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00670 1 189 Receptor kinase-like Gene Family AT4G08850 43.694 1.96e-51 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g00670 Pkinase 4.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00670 - - mtr:11422970 518.85