Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00669 ATGAACTTGACAAAATATTTAGTTTCTAATATTGTTGATCCAAAAATGTGGATGCTCTTTGTTCTTATCTTGGGTTTGATAGTTGGGACTCAATCATCCACAATGACACCCTCACTTCATAAAGAAGCAAATGCAATATTGAAGAGTGGATGGTGGGACACATCTTATGAACGTTTCACAATTTCTAGTTATTGTAATTGGTCTGATATTATTTGCAACAAGGATGGAAGCATTAAATCAATCCACATAGATGCTCAAAATTCAGAAGTGGTTTGGGGGAATAAATTTGCAACACTCAATTTATCTTCTTTCCACAATTTAGAAAGCCTTGTTATCAAGTCAATGGGACTACATGGGACTATCCCAACAGAAATTGGTCTTCTCTCCAAGCTCACTCATCTTGATCTATCTGACAATTCTCTTTCAGGCAAGGTACCTCTTTCACTAAAAAATCTCACAAAACTCACTCACCTTGATCTTGGTCGTAATTATTTTTTCGATGAGATACCTCTTTCACTAGGAAACCTTGGAAGATTAAAGCACTTAGACATCTCTTACAATGTCTTTTATGGTTTCATTCCTCATGAATTGGGATTCATTAAACCTCTCATTGAATTAAATCTATCAAATAATAGAATTGAAGGTGAGATTCCTTCTTCACTAGGAAATCTCACCAAACTCACTCATCTTGATATGTCTGCCAATTTTCTTGTAGGTTTGATACCTCCTTCATTAGAAAACCTTAGACAATTAGTGTACCTAAACATCTCTTTTAACAATATTAATGGTTCCATCCCTCCCAAGTTGTGGTTCCTAAAAAATATCACTTCACTAAGTCTATCTAACAATAGATTAAAAGGCGAGATACCTTCTTCGGTAAAAAATCTCAACCAATTAGAGGAGTTAGACATTTCCTACAATAACATTCTAGGATTCATTCCTTTTGAGTTGTGGTTCTTGAAAAATCTCACTACACTAAGTCTATCTAACAATAGATTCAAAGGTGAGATACCTTCTTCACTAAGAAATCTCAACCGATTAGAGAAGTTAGATATTTCCCACAACAACATTCAAGGATTCATTCCTTTTGAGTTGGGGTTCTTGAAAAATCTCACTAGATTAGATCTATCTAACAATAGATTCAAAGGTGAGATACCTTCTTCACTAAGAAATCTCTATCGATTAGAAAACCTAGATATTTCTAACAACAACATTCAAGGATACATTCCTCTTGAGTTGGGGTTACTAAAAAAGCTCACTACATTAAATCTATTTAACAATAGATTCAAAGGTGAGATACCTTCTTCACTAGGAAACCTCAACCAATTAGAGGTGCTGAATATTTCTCTCAACAACATTCAAGGATTTATTCCTCTTGAATTAGGGTTCCTTAAAAATCTGATTATATTAGATCTATCTCGCAATCGATTCCAGGGTGGGATACCTTCTTCACTAGGAAATCTCAACCAATTAAAGGAGCTAAACATTTCTCACAACAACATTCAAGGATTCATTCCTCTGGAGTTGGGGTTCCTGAAAAATCTCACTACATTAGATCTATCTTACAATAGACTCAATAGAAACTTGCCCATTTTCCTTTCAAATCTCACACAATTAGATTACCTTGACATCTCTAACAATGACCTCACTGGTTCCCTTCCATCTAATTTTGATCAATTAACTGAATTGCGAGTGTTGTCGTTGAGCAATAATATTCTCAAGGGAATGGTTCCCCAATCTCTCTGTACTGTCACTTATGTGGACATTTCCTACAATTATTTGAAGGGCCCTATTCCAAATTGTAATGATTCTAACAAGATAATAGGGAACAAGGATGTATGTACTGCCATTTTATATGAACAAATCAACTTCAAATTCCAACCTTGCAAGAAAAGTAAAAAAGCAACTCACAATGTTATTGTTGTTGTTGTTGTTATTGTTCCTATCCTTATGATTTTAATATTAGCATTCTCACTTCTCATGTGTTTGAAACTCCGTCATAACAAGCATGCAAACACAACTACAACAACAAAAAATGGGGACTTGTTTTGCTTATGGAATTATGATGGAAAAATAGCATTTGATGATATTATCAAAGCAACAGAAGACTTTGATATGAGATATTGCATTGGAACAGGAACATATGGAAGTGTCTACAAGGCACAATTACCATCTGGAAAAATTGTTGCCTTAAAAAAACTTCACGGATACAAAGCAGAGGTTCCTTCTTTTGATGAAAGTTTTAGAAATGAAGTGAGAATTTTATCAGAAATAAGACACAAGAATATTGTGAAGCTTTATGGATTTTGCTTGCACAAAAGAATCATGTTTTTGATTTATCAGTACATGGAGAAAGGAAGCTTGTTCTCTATCTTGTATGATGATGTAGAAGCCATGGAATTCAATTGGAGAAAAAGGATTAACATTGTTAAAGGAGTTGCATTTGCTCTATCTTATCTTCATCATGATTGCAGCCCTTCGATAGTGCATAGAGACGTATCGAGTAAAAATATCTTGCTAAACTCTGACTGGCAGCCTACTGTTTCTGATTTTGGCACAGCTCGACTCCTTCAACATGATTCATCCAATCGAACAATAGTTGCTGGAACAATCGGATATATCGCTCCTGAGCTTGCTTATACCATGGTTGTGAGTGAAAAGTGCGATATATACAGCTTTGGAGTGGTGGCCCTAGAATGTTTAATGGGAAGGCACCCCGGAGAAATATTGTCGTCACTTCAATTAGCATCAACTCAAAGCATGAAATTATGTCAAATATTAGACCAACGTCTTCCATTTCCAAATAATGCGATGGTTTTACTTGGCATGATTCGTGTAGCCGTAATAGCATTTGCATGCTTAAATTTCAATCCTAGCTCTCGACCAACAATGAAATGTGTCTCACAAAGTTTTCTCTCCGAGCTTACACCATCAACGGTTCCTCTGAGTGAAATTTCAATGCAGCAACTTATGAGCCAAGAACTCAAAACATTATTTCATATTGTCAACCCATGA 3015 0.3536 MNLTKYLVSNIVDPKMWMLFVLILGLIVGTQSSTMTPSLHKEANAILKSGWWDTSYERFTISSYCNWSDIICNKDGSIKSIHIDAQNSEVVWGNKFATLNLSSFHNLESLVIKSMGLHGTIPTEIGLLSKLTHLDLSDNSLSGKVPLSLKNLTKLTHLDLGRNYFFDEIPLSLGNLGRLKHLDISYNVFYGFIPHELGFIKPLIELNLSNNRIEGEIPSSLGNLTKLTHLDMSANFLVGLIPPSLENLRQLVYLNISFNNINGSIPPKLWFLKNITSLSLSNNRLKGEIPSSVKNLNQLEELDISYNNILGFIPFELWFLKNLTTLSLSNNRFKGEIPSSLRNLNRLEKLDISHNNIQGFIPFELGFLKNLTRLDLSNNRFKGEIPSSLRNLYRLENLDISNNNIQGYIPLELGLLKKLTTLNLFNNRFKGEIPSSLGNLNQLEVLNISLNNIQGFIPLELGFLKNLIILDLSRNRFQGGIPSSLGNLNQLKELNISHNNIQGFIPLELGFLKNLTTLDLSYNRLNRNLPIFLSNLTQLDYLDISNNDLTGSLPSNFDQLTELRVLSLSNNILKGMVPQSLCTVTYVDISYNYLKGPIPNCNDSNKIIGNKDVCTAILYEQINFKFQPCKKSKKATHNVIVVVVVIVPILMILILAFSLLMCLKLRHNKHANTTTTTKNGDLFCLWNYDGKIAFDDIIKATEDFDMRYCIGTGTYGSVYKAQLPSGKIVALKKLHGYKAEVPSFDESFRNEVRILSEIRHKNIVKLYGFCLHKRIMFLIYQYMEKGSLFSILYDDVEAMEFNWRKRINIVKGVAFALSYLHHDCSPSIVHRDVSSKNILLNSDWQPTVSDFGTARLLQHDSSNRTIVAGTIGYIAPELAYTMVVSEKCDIYSFGVVALECLMGRHPGEILSSLQLASTQSMKLCQILDQRLPFPNNAMVLLGMIRVAVIAFACLNFNPSSRPTMKCVSQSFLSELTPSTVPLSEISMQQLMSQELKTLFHIVNP 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00669 1004 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 195 390 - -
Trre13g00669 1004 Gene3D Ribonuclease Inhibitor 507 622 IPR032675 -
Trre13g00669 1004 Gene3D Ribonuclease Inhibitor 363 455 IPR032675 -
Trre13g00669 1004 FunFam Leucine-rich repeat receptor protein kinase EMS1 409 506 - -
Trre13g00669 1004 PRINTS Leucine-rich repeat signature 131 144 - -
Trre13g00669 1004 PRINTS Leucine-rich repeat signature 512 525 - -
Trre13g00669 1004 FunFam Nuclear pore complex protein NUP107 34 194 - -
Trre13g00669 1004 FunFam MDIS1-interacting receptor like kinase 2 783 977 - -
Trre13g00669 1004 Gene3D Phosphorylase Kinase; domain 1 664 782 - -
Trre13g00669 1004 SMART LRR_typ_2 152 176 IPR003591 -
Trre13g00669 1004 SMART LRR_typ_2 512 534 IPR003591 -
Trre13g00669 1004 SMART LRR_typ_2 416 440 IPR003591 -
Trre13g00669 1004 SMART LRR_typ_2 248 272 IPR003591 -
Trre13g00669 1004 SMART LRR_typ_2 320 344 IPR003591 -
Trre13g00669 1004 SMART LRR_typ_2 368 392 IPR003591 -
Trre13g00669 1004 SMART LRR_typ_2 296 317 IPR003591 -
Trre13g00669 1004 SMART LRR_typ_2 128 151 IPR003591 -
Trre13g00669 1004 SMART LRR_typ_2 560 583 IPR003591 -
Trre13g00669 1004 SMART LRR_typ_2 224 247 IPR003591 -
Trre13g00669 1004 SMART LRR_typ_2 536 559 IPR003591 -
Trre13g00669 1004 SMART LRR_typ_2 464 488 IPR003591 -
Trre13g00669 1004 FunFam Leucine-rich repeat receptor protein kinase MSP1 666 782 - -
Trre13g00669 1004 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 398 972 - -
Trre13g00669 1004 ProSitePatterns Protein kinases ATP-binding region signature. 710 732 IPR017441 GO:0005524
Trre13g00669 1004 ProSiteProfiles Protein kinase domain profile. 704 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00669 1004 SUPERFAMILY RNI-like 101 406 - -
Trre13g00669 1004 Gene3D Ribonuclease Inhibitor 34 200 IPR032675 -
Trre13g00669 1004 SMART LRR_sd22_2 392 413 - -
Trre13g00669 1004 SMART LRR_sd22_2 488 509 - -
Trre13g00669 1004 SMART LRR_sd22_2 272 298 - -
Trre13g00669 1004 SMART LRR_sd22_2 536 559 - -
Trre13g00669 1004 SMART LRR_sd22_2 224 250 - -
Trre13g00669 1004 SMART LRR_sd22_2 128 154 - -
Trre13g00669 1004 SMART LRR_sd22_2 320 343 - -
Trre13g00669 1004 SMART LRR_sd22_2 344 365 - -
Trre13g00669 1004 SMART LRR_sd22_2 512 531 - -
Trre13g00669 1004 SMART LRR_sd22_2 368 391 - -
Trre13g00669 1004 ProSiteProfiles Leucine-rich repeat profile. 514 537 IPR001611 GO:0005515
Trre13g00669 1004 SUPERFAMILY RNI-like 313 599 - -
Trre13g00669 1004 ProSitePatterns Tyrosine protein kinases specific active-site signature. 828 840 IPR008266 GO:0004672|GO:0006468
Trre13g00669 1004 Gene3D Ribonuclease Inhibitor 201 362 IPR032675 -
Trre13g00669 1004 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 507 598 - -
Trre13g00669 1004 SUPERFAMILY Protein kinase-like (PK-like) 690 969 IPR011009 -
Trre13g00669 1004 Pfam Leucine rich repeat 322 381 IPR001611 GO:0005515
Trre13g00669 1004 Pfam Leucine rich repeat 466 525 IPR001611 GO:0005515
Trre13g00669 1004 Pfam Leucine rich repeat 204 261 IPR001611 GO:0005515
Trre13g00669 1004 Pfam Protein kinase domain 710 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00669 1004 Pfam Leucine Rich Repeat 154 176 IPR001611 GO:0005515
Trre13g00669 1004 Pfam Leucine Rich Repeat 130 152 IPR001611 GO:0005515
Trre13g00669 1004 Gene3D Ribonuclease Inhibitor 456 506 IPR032675 -
Trre13g00669 1004 Gene3D Transferase(Phosphotransferase) domain 1 783 980 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00669 Trre-Chr13 5230773 5234234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00669 101 876 Receptor kinase-like Gene Family AT4G08850 38.991 1.11e-179 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g00669 Pkinase 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00669 - - mtr:11422970 1016.53