Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00666 ATGGGAGAGAGTTCTATGAACCTTGTAGAAAGTACAACAAGAAACAACAAAATGGAAGAAGTTGAAAGAGAAGAAGAAATAGATCCAGAAAGCAGCAATCCACTAAATCAAACACTTCTCAAGAGGAATAGAACACTATCTTCAAATCCACTTGCACTTGTTGGTGAAAAAGTTTCCTACATAGAAAGTTTAGACTATGAGATCAATGAGAATGATCTATTCAAACATGGTTGGAGAAGTAGATCAAGAGTTGAAGCATTGCAATATATATTCTTGAAATGGTTACTTGCATTTCTTGTTGGATTTCTTACTGGTCTTATAGCTACTCTTATAAATCTTGCTGTTGAGAACATTGCTGGATACAAGTTTCTGGTTGTTCTTAAATATATCAATACAGAAAGGTACTTGACAGGTTTCCTATATTTCACTGGAATAAATTTCATTTTAACATTTGCTGCTTCTATTCTGTGTGTGTGTTTTGCACCCACAGCAGCTGGTCCTGGAATACCTGAAATCAAAGCTTATCTTAATGGTGTTGATACACCAAACATGTATGGTGCTACAACATTGATAGTTAAGATATTTGGAAGCATTGGAGCTGTCTCTGCAGGCCTAGATCTTGGGAAAGAAGGACCTTTGGTACATATAGGAAGCTGCATTGCTTCCTTACTAGGCCAGGGAGGTACTGACAATTACAAAATCAAATGGCGCTGGCTACGCTATTTCAACAACGATCGCGACCGTCGGGATCTTATTACCTGTGGTGCATCTTCAGGAGTTTGTGCAGCTTTCAGGTCCCCGGTCGGTGGAGTTCTGTTTGCTCTTGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTTCTATGGAGAACATTTTTTTGCACTGCTGTGGTGGTGGTAGTGCTTAGGGCCTTCATTGAAATCTGCAACTCCGGGAAATGTGGACTTTTCGGTGCAGGCGGGTTGATCATGTTTGACGTCAGCAATGTCACTGTTAGCTACCATGCAATGGATATCCTCCCTGTTGCAGTCATTGGAATCATAGGTGGTTTATTAGGAAGCCTTTATAATCATCTTCTACACAAGGTCCTCAGACTCTACAATCTCATCAATCAGAAAGGTAAAATACATAAACTCCTCCTCAGTCTTGCAGTAGTACTGTTTACGTCAGTGTGTCAATATGGTCTCCCATACCTAGCAAAATGCACCCCTTGTGATTCATCACTTGCAGACGCAGAATCCGTCTGCCCCAGCAATGGAAGGTCTGGAAATTTCAAACAATTCAATTGCCCACCTGGCCACTACAACGATCTTGCTACTCTTCTGCTTACCACTAATGACGATGCTGTTCGAAACATATTCTCAACAAACACACCTTATGAATATCAACCCTCCTCCCTCATAATTTTCTTTGCACTATATTGCATATTAGGACTAATTACTTTCGGAATTGCTGTGCCGACTGGACTCTTCCTCCCAATCATCCTTATGGGGTCGGCTTATGGCCGCCTTCTTGGTATGATCATGGGACCTCATACAAAAATTGACCAAGGATTGTTTGCTGTACTTGGTGCAGCCTCTCTCATGGCTGGTTCCATGAGGATGACTGTATCCCTTTGCGTGATTTTCCTTGAACTTACCAGCAATCTTCTCCTACTACCAATAACAATGATTGTTCTCCTAATAGCCAAAACTGTAGGAGATTGCTTCAACCCTAGCATCTATGAGATTATACTGCATTTGAAAGGCCTTCCTTTCATGGACGCAAATCCTGAGTCATGGATGAGAAACCTTACTGTTGGCGAGCTTGTAGATGTAAAGCCGGCAGTGATTTCCCTCCAAGGAGTAGAAAAGGTATCCAAGATAGTAGATGTCTTGAAAAACACTACTCATAATGGCTTCCCGGTGATGGACGATGGGATAGTACCGCCAGTAGGACAGGCCAACGGGGCTACAGAACTGCATGGACTAATTCTAAGAGCACACCTTATTCAAGCATTAAAGAAGAAGTTCTTCTTGAAAGAGAGAAGAAGAACAGAGGAATGGGAAGTGAGAGAGAAATTTACCTGGGTAGAACTGGCCGAGAGAGAAGGAAATATTGAAGAGGTGGCTATAACGAGGGAAGAAATGGAAATGTTTGTTGATCTACATCCTCTCACCAATACAACTCCATTTACTGTGCTAGAGAGCATATCAGTAGCAAAAGCAATGATCCTCTTCAGGCAAGTTGGACTTCGTCATCTGCTTGTAGTTCTGAAATATCAAGCATCAGGGGTATGCCCTGTAATTGGTATTTTGACCAGACAGGATCTATTGGCTCACAACATTCTGACAGTCTTTCCTCACCTGGCAAAATCTAAGAGCAGACAGAAGAGAAATTGA 2379 0.4191 MGESSMNLVESTTRNNKMEEVEREEEIDPESSNPLNQTLLKRNRTLSSNPLALVGEKVSYIESLDYEINENDLFKHGWRSRSRVEALQYIFLKWLLAFLVGFLTGLIATLINLAVENIAGYKFLVVLKYINTERYLTGFLYFTGINFILTFAASILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLIVKIFGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGTDNYKIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFCTAVVVVVLRAFIEICNSGKCGLFGAGGLIMFDVSNVTVSYHAMDILPVAVIGIIGGLLGSLYNHLLHKVLRLYNLINQKGKIHKLLLSLAVVLFTSVCQYGLPYLAKCTPCDSSLADAESVCPSNGRSGNFKQFNCPPGHYNDLATLLLTTNDDAVRNIFSTNTPYEYQPSSLIIFFALYCILGLITFGIAVPTGLFLPIILMGSAYGRLLGMIMGPHTKIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTSNLLLLPITMIVLLIAKTVGDCFNPSIYEIILHLKGLPFMDANPESWMRNLTVGELVDVKPAVISLQGVEKVSKIVDVLKNTTHNGFPVMDDGIVPPVGQANGATELHGLILRAHLIQALKKKFFLKERRRTEEWEVREKFTWVELAEREGNIEEVAITREEMEMFVDLHPLTNTTPFTVLESISVAKAMILFRQVGLRHLLVVLKYQASGVCPVIGILTRQDLLAHNILTVFPHLAKSKSRQKRN 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00666 792 ProSiteProfiles CBS domain profile. 719 785 IPR000644 -
Trre13g00666 792 SUPERFAMILY Clc chloride channel 71 588 IPR014743 -
Trre13g00666 792 PRINTS Plant CLC chloride channel signature 310 317 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre13g00666 792 PRINTS Plant CLC chloride channel signature 437 453 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre13g00666 792 PRINTS Plant CLC chloride channel signature 278 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre13g00666 792 PRINTS Plant CLC chloride channel signature 292 302 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre13g00666 792 PRINTS Plant CLC chloride channel signature 67 75 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre13g00666 792 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 16 777 - -
Trre13g00666 792 PRINTS Chloride channel signature 485 505 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre13g00666 792 PRINTS Chloride channel signature 193 212 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre13g00666 792 PRINTS Chloride channel signature 517 533 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre13g00666 792 PRINTS Chloride channel signature 257 276 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre13g00666 792 PRINTS Chloride channel signature 535 554 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre13g00666 792 PRINTS Chloride channel signature 573 587 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre13g00666 792 PRINTS Chloride channel signature 162 179 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre13g00666 792 Gene3D - 588 778 IPR046342 -
Trre13g00666 792 CDD CBS_pair_voltage-gated_CLC_euk_bac 606 773 - -
Trre13g00666 792 Pfam Voltage gated chloride channel 151 566 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre13g00666 792 Gene3D Clc chloride channel 85 587 - -
Trre13g00666 792 SMART cbs_1 608 667 IPR000644 -
Trre13g00666 792 SMART cbs_1 722 775 IPR000644 -
Trre13g00666 792 SUPERFAMILY CBS-domain pair 590 772 IPR046342 -
Trre13g00666 792 CDD ClC_6_like 62 586 - -
Trre13g00666 792 Pfam CBS domain 721 771 IPR000644 -
Trre13g00666 792 MobiDBLite consensus disorder prediction 1 35 - -
Trre13g00666 792 FunFam Chloride channel ClC3 85 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00666 Trre-Chr13 5207501 5211426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00666 28 786 Ion Channels AT3G27170 79.710 0.0 1236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00666 K05016 - gmx:100788620 1368.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00666 13 5207501 5211426 Trre13g00666 13 5207501 5211426 ECH
Trre13g00666 13 5207501 5211426 Trre3g03730 3 48196716 48203196 PCT