Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00649 ATGGATGTTGAAAATCAGAATCCAGATTCAGAGTTTCCGTTCTGGAAACCCATTCCACGTAGATTCAAACCCGATTCCCCTTTCTTCGCTATCGGTAACCTCGAACGAGAACTTCTTGTTAAACAGGTTGCTTTGGAATTTACAGAAGAAAATGAAACACTTGAGGATTTGATACAAGAGGATGGAAGGGAAGTTTTCTGTCCCATTGTTGGGTGTGGATCGCGTTTGGCCTCAATGGAGGACTTTGAAAATCACTATAATGCAAGACATACTGCATCCTGTTCTGTGTGTTCTAGAGTCTACCCAACATCACGTTTGCTTAGCATTCATGTTTCGGAAGCTCATGATTCTTTCTTTCAGGCAAAAGTTGCACGTGGCTATGACATGTATGAATGCTTAGTGGAAGGTTGTGGTTTGAAATTCAAAAGCTACAAAAGTAGGCATCAGCATCTAGTCGACAAGCATAAATTCCCAACGTCGTTCGAGTTTTTCAAGAAGGCTCTGCCTTCAAAGAAACACAGGATGAAGACTCAACGCAAAAAACCTTCTCATAAGGAGGATACTTCAGGAATGATGGAAGTGGAAAATGCAGCCATAGATGACCTTGTTTCAGCAATCTCTAAATTGAATACTTCGGACTCAACTCCTTCATCTATCAGCTTTGGTCGCCGTAACACCAAAGGCATGACATTTGTCCCGCGAGCTATTCAGCGTGGGAAGGGATCAAACTCAGATTCACCCGTTACAAAGAGATAA 756 0.422 MDVENQNPDSEFPFWKPIPRRFKPDSPFFAIGNLERELLVKQVALEFTEENETLEDLIQEDGREVFCPIVGCGSRLASMEDFENHYNARHTASCSVCSRVYPTSRLLSIHVSEAHDSFFQAKVARGYDMYECLVEGCGLKFKSYKSRHQHLVDKHKFPTSFEFFKKALPSKKHRMKTQRKKPSHKEDTSGMMEVENAAIDDLVSAISKLNTSDSTPSSISFGRRNTKGMTFVPRAIQRGKGSNSDSPVTKR 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00649 251 MobiDBLite consensus disorder prediction 210 225 - -
Trre13g00649 251 ProSitePatterns Zinc finger C2H2 type domain signature. 94 115 IPR013087 -
Trre13g00649 251 MobiDBLite consensus disorder prediction 210 251 - -
Trre13g00649 251 ProSitePatterns Zinc finger C2H2 type domain signature. 132 155 IPR013087 -
Trre13g00649 251 PANTHER UNCHARACTERIZED 9 239 IPR039258 -
Trre13g00649 251 SMART c2h2final6 130 155 IPR013087 -
Trre13g00649 251 SMART c2h2final6 65 90 IPR013087 -
Trre13g00649 251 SMART c2h2final6 92 115 IPR013087 -
Trre13g00649 251 MobiDBLite consensus disorder prediction 237 251 - -
Trre13g00649 251 Coils Coil 40 60 - -
Trre13g00649 251 ProSitePatterns Zinc finger C2H2 type domain signature. 67 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00649 Trre-Chr13 5097316 5099694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00649 12 246 C2H2 Transcription Factor Family AT5G14140 66.393 6.93e-116 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g00649 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00649 - - gmx:100819557 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00649 13 5097316 5099694 Trre13g00649 13 5097316 5099694 ECH