Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00635 ATGGCTTCTTCTTCATCAACTTTTGGTGCTTCTCAGTCAAACTCAAAACATGAGGTACATAAGTGGAGAACTGCTCTGCATCAAGCAGCTAACTCAGCAGGATGGGATTCCTCAAATATTAGGTTGGAGGCTGACCTAGTTGACAAAATTGTTGAAGATATACTAGATAAGTTGAAACATATGAGCCCACATGTTCCAAAGAAGGGGCTTGTAGGAATTACTCGACACATGGCACATGTGGAATCATTGTTATGCACTGGAGCAGCTGATGTACGGATTATTGTTCGTGAAGAATCCATGAAAGAGCCTGGAAAACGAAGTCGATTGTGGGATCCTAAAGAAATTTATGATGTCCTCAAGTACAATATGGGTACTGGCAGTATTGAGAGCATAGCATTGGACATGTCTCAAATCAAAGAAGTGACATTAAGGCCTCAGAAGCTTGTTGAACTTGATCTAAAACATAGCCTTGTTGAAAAGCTATGGAGTGGAGTGCAGGATCTTGTGAATTTGAGGTTATTGTACCTTGGTGGTTCCAAGCACCTGATTGAGCTCCCAGATTTGTCTTTGGCTTCAAAGCTTGAAGAATTGCATCTTGATGATTGTACAAGCTTGTTGCATGTCCCTTCATCCATTTTGTCACTTGATAGCCTTTTTGCACTAAATCTGAGAGGCTGTAAAGAGCTTCATTACATTCAAAGTGAGAAACAATCTAGATCGCTTAAATGGCTCAATCTTAGAGGATGCTTGAGACTTGTAAAATATTCAGTTATTTCAGTGAAATTGGAATATTTGAACTTAGATAACACGGCAATTGAAGAACTGCCTTCATTAGTTATTGGTATAGATTGTAGCATCCAGGTTTTTGACTGCCCAAAACTTGAGAAATTACCTGCAACATTTGATTCCACATTGTCCATTACTTCACTCTGTCTAGATAATTGTTTAAATTTATCAGAACTCCCCGACAACCTCGGCCTCTTATCAAATTTAAACAAACTATCATTAAGAGGAAGCAATATTCAGAACTTGCCGGATAGCATAAAATATCTTTCGCAGTTAAGAGATCTCAATGTGAGCAACTGTAGGAGGCTCCGTTCGTTGCCCGAGCTTCCATTATTTTTACAAGACTTGAATGCAAGTAATTGCATTTCCCTAGAAACAGTATCCAGCTTAGGGATCTCAGTTTTGAAAGATTCATTTGATAAGCTGAAGAAGATATCATTTCTTAGACAGATTCAAGAGAAAGAAAAAATGTCTATTCGTCATCGTGACTATTTGGGAAGATTTGAGTTCTATAACTGCATGAAATTGGATCAGATTGCATGCAAGGCTATTATGGAAGAGGCTGTGATTATAATTCAGATAGCAGCCATCCTGTCCTCAAGGGTTGGATATTATAATGATCCTTACAGTCAAACCGGGGAAATGAAGTCCCAGATTGGTTCATATTGTATGTCCCGTCCGGTTTATATTATTTTACCAGGAAATGAAGTCCCAGATTGGTTCAAGTTTAAAAGAACAGACTCCTCTATCATAACAACTAAACTTTCTTCATTGGGGCTTGGTTTTTGCAAATTCCCCGGTTTTGCCTTTTGCCTTGTTGTTGGACTTGGACCATCTGACTCAAACAAGAAGAGAATTTGTGGTACTAGTTTTGTGGCAGGGTGTAGATGCTATGTTAAGGGAAATTATGCTGGAACTTGCATTATAAAGTCTTCTTCCACTGATGCCAAATCAGATCAGGTATGGCTGTGGTATGACCAGATTTTAAACGTTGTAGAAGGGAGCGATTTACCTTCAGATGAGGTCTCCTTTGAGTTTTTTGTCTGGCCTTGTAGTTCAGGACTTGTTGTGAAACATTGCGGAGTTCGACCATTGTCTGATCCATTAGACATTTTGCAAAGCTCAAGCGAAGAAGAAGCTATCATAGAAGGTAAGAGCGCATATCATGAGTTTGAAGACAACAAAGCTCCAACCAGTTATACCCTTATTCGCCAATATGCTTGTCCTCGTGACCAGGTCCTTGATTTATCATCAAAAGAAAGGATTTCAGGGTATCACGATGGACATTTTGGGAAGTCCACCCCATCAATTTATTGTGCCACAAATGTTGTTGAACTTCAAATGCAACACGATCGCTTTGATAATTGTGCCGAAGTAATTGTTAGTTTTGACCTTGTTGGGGGTAGTCCCCAGCCACTGCATGAACTGCGTTATTTAGCACGGCAACTTCAGGATTACTATTGTTACTTTGGTGAACTTGTAGACAACATCAACGTCTTTTCATCACTAAAGAGATTGTCTCTATATGATTGCAATATTGAAAGCTTGGCTGCTGGCATCAAGCATCTTTCAAGTCTGGAACATCTTTCATTGATGTGCTGCAAGAGGCTTATGTCTCTCTCCAATCTTCCACCATCCCTTGGGAGATTGTCTATCATTGAGTGCACGTCTCTGGAGACAGTTGAATTTTCTGAGGAAAACACCATGATATTTGTTGGAATATCCAATGAAATGGTGTATGAGAAAGTATCGAGAATACAAGTTACTGACCCAGGAGCAAGTGTAACAGACTGGTGA 2583 0.3961 MASSSSTFGASQSNSKHEVHKWRTALHQAANSAGWDSSNIRLEADLVDKIVEDILDKLKHMSPHVPKKGLVGITRHMAHVESLLCTGAADVRIIVREESMKEPGKRSRLWDPKEIYDVLKYNMGTGSIESIALDMSQIKEVTLRPQKLVELDLKHSLVEKLWSGVQDLVNLRLLYLGGSKHLIELPDLSLASKLEELHLDDCTSLLHVPSSILSLDSLFALNLRGCKELHYIQSEKQSRSLKWLNLRGCLRLVKYSVISVKLEYLNLDNTAIEELPSLVIGIDCSIQVFDCPKLEKLPATFDSTLSITSLCLDNCLNLSELPDNLGLLSNLNKLSLRGSNIQNLPDSIKYLSQLRDLNVSNCRRLRSLPELPLFLQDLNASNCISLETVSSLGISVLKDSFDKLKKISFLRQIQEKEKMSIRHRDYLGRFEFYNCMKLDQIACKAIMEEAVIIIQIAAILSSRVGYYNDPYSQTGEMKSQIGSYCMSRPVYIILPGNEVPDWFKFKRTDSSIITTKLSSLGLGFCKFPGFAFCLVVGLGPSDSNKKRICGTSFVAGCRCYVKGNYAGTCIIKSSSTDAKSDQVWLWYDQILNVVEGSDLPSDEVSFEFFVWPCSSGLVVKHCGVRPLSDPLDILQSSSEEEAIIEGKSAYHEFEDNKAPTSYTLIRQYACPRDQVLDLSSKERISGYHDGHFGKSTPSIYCATNVVELQMQHDRFDNCAEVIVSFDLVGGSPQPLHELRYLARQLQDYYCYFGELVDNINVFSSLKRLSLYDCNIESLAAGIKHLSSLEHLSLMCCKRLMSLSNLPPSLGRLSIIECTSLETVEFSEENTMIFVGISNEMVYEKVSRIQVTDPGASVTDW 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00635 860 Gene3D - 2 64 IPR035897 -
Trre13g00635 860 SUPERFAMILY L domain-like 126 824 - -
Trre13g00635 860 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 262 445 - -
Trre13g00635 860 Gene3D Ribonuclease Inhibitor 667 832 IPR032675 -
Trre13g00635 860 Gene3D Ribonuclease Inhibitor 119 257 IPR032675 -
Trre13g00635 860 Pfam Leucine Rich Repeat 147 166 IPR011713 -
Trre13g00635 860 Gene3D Ribonuclease Inhibitor 258 444 IPR032675 -
Trre13g00635 860 Pfam C-JID domain 494 625 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00635 Trre-Chr13 4957265 4962310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00635 61 364 WRKY Transcription Factor Family AT4G12020 30.563 7.62e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00635 - - tpra:123891409 1081.24