Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00632 ATGTGTAGCACTGATCGTGATCCAAATAAGGGAAAAGAGAAAGTGAGTGAGGAACCAGTAGTCAATTTCAAGACTGTGGTTCGGAACAATGAGAACAAGCGAAAGGCAATCGTTCTAGTTGAACCTGATGTTGAAACACAGAATTCAAAGACCTCGAACAATGGTGATGCTGGTGAAGAAGAATCAACACATTCATCCAAAGAAATGTCTCCATTTCTTCTTTTTGGATTCATTATTGATCCTAATAGGAGAATGAAACGTGCTTACTCATGCAATTTTTGCAACAGAAAATTCATTACTCCACAAGCATTAGGTGGCCATCAAAATTGCCACAAATGGGAGAAAAAATTCAAAAAAAGGATTGAAGATATGAACAATGCTAATCAAGGGGTGGTAAGTCAAAACACCATCATTCCATACCATGGCGGGTATGGATATGACAATATGATCCAAGGCTTAGTGAGTCAACAAATTACTATGACTGGAGTTGACTATGGTTTAGTTTCAAATGGAGATGCTGAACATGAAGACAAAGAGATTGAGGAGGAAGAAGAATCCAATATCGACTTGACTCTTAAGCTTTAA 585 0.3778 MCSTDRDPNKGKEKVSEEPVVNFKTVVRNNENKRKAIVLVEPDVETQNSKTSNNGDAGEEESTHSSKEMSPFLLFGFIIDPNRRMKRAYSCNFCNRKFITPQALGGHQNCHKWEKKFKKRIEDMNNANQGVVSQNTIIPYHGGYGYDNMIQGLVSQQITMTGVDYGLVSNGDAEHEDKEIEEEEESNIDLTLKL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00632 194 Gene3D Classic Zinc Finger 62 137 - -
Trre13g00632 194 SUPERFAMILY beta-beta-alpha zinc fingers 86 118 IPR036236 -
Trre13g00632 194 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Trre13g00632 194 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 13 142 IPR044246 GO:0009788
Trre13g00632 194 MobiDBLite consensus disorder prediction 37 67 - -
Trre13g00632 194 MobiDBLite consensus disorder prediction 44 59 - -
Trre13g00632 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00632 Trre-Chr13 4932641 4933225 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00632 87 194 C2H2 Transcription Factor Family AT5G57520 28.814 3.96e-13 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g00632 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00632 - - mtr:120577076 171.4