Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00630 ATGTGCAACATTGATCGTGATCCAAATAAGGGAAAAGAGAAAGTCAATGAAGAACCAATAGTCAATTTCAAGACTATGGAGATTCAAAAGAATGAGAACAAGCGAAAGACAATCATTCTAGCTGAATCTGATGTTCATGCAAAGAATTCAAAGAGTCCTAACAATGGTAATGCTGGTGAAAAAGAATCAACAAATTCATCGAAAGACACTTCTCCATTTATTCTTTTTGGATTCATTATTGATCCAAAGAATAGAATGAAACATGCTTACTCATGCAATTTTTGTAGCCGAAAATTCATTAACCCACAAGCATTAGGTGGCCATCAAAATAGCCACAAATTGGAGAGAAGACTCAAACAAAGGATTGACAATATGAAAATTGATTGGATAAATTACTCAAATGGTAATCAAGGGGTGGCAAGTCAAAACACCATCATTCCATACCATGGGGGCTATGGATATCAATATGAAGTTATCAATGAGGCTCACCGATGCATTGTGAGTCAACAAACTACTATGCCTAAGATTGACTATGGTTCAGTTTCAAATCTGAACGCTAGTGATGCTGTTGATCATGATGAAAAAGAGACTCAGGAGGAGGAAGAATCCAATATTGATTTGACCCTTAAGCTTTAA 636 0.3585 MCNIDRDPNKGKEKVNEEPIVNFKTMEIQKNENKRKTIILAESDVHAKNSKSPNNGNAGEKESTNSSKDTSPFILFGFIIDPKNRMKHAYSCNFCSRKFINPQALGGHQNSHKLERRLKQRIDNMKIDWINYSNGNQGVASQNTIIPYHGGYGYQYEVINEAHRCIVSQQTTMPKIDYGSVSNLNASDAVDHDEKETQEEEESNIDLTLKL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00630 211 MobiDBLite consensus disorder prediction 189 211 - -
Trre13g00630 211 MobiDBLite consensus disorder prediction 47 68 - -
Trre13g00630 211 Gene3D Classic Zinc Finger 79 127 - -
Trre13g00630 211 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Trre13g00630 211 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Trre13g00630 211 SUPERFAMILY beta-beta-alpha zinc fingers 88 117 IPR036236 -
Trre13g00630 211 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 16 154 IPR044246 GO:0009788
Trre13g00630 211 MobiDBLite consensus disorder prediction 32 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00630 Trre-Chr13 4924599 4925234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00630 79 172 C2H2 Transcription Factor Family AT1G80730 31.132 4.91e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g00630 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00630 - - mtr:120577076 212.616