Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00625 ATGGATTGGGATTGGAAAGAGTTTGCTTGGGATCCATCTGGATTGGAAGATTTGAAAAATGAAGGAGATTCTGTTGATTTGAGGCTTGGTGAAGCTTCTGATTCATTGGAAAAATCAGTTCAAGATACAGGAAAAGAAGATTTGAAAGCTGTTTCGTCGTTTTCAGGATCATCGAAAAGATTACGTTTGCAAAATGGATCGCAGAATATGATTTGCTCGGTTGATGGATGTAACGCCGATCTTAGTGATTGTAGAGAGTATCATAAGCGTCATAGGGTATGCGAAAAGCACTCGAAGACACCGGTTGTTTTGGTTGGAGGTAAGCAGCAGAGGTTCTGCCAACAATGCAGCAGGTTTCATTCGCTTACGGAATTTGATGACGTTAAGAGGAGTTGCAGGAAGCGTCTTGATGGACATAATAAGCGAAGGAGGAAACCTCAGCCACCTTCTCTTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGACCTAGAATCTTGCACTTTGGTAGCCCTCAAGCATATGTGAATGTGAATCCTATTATGAGAAACATTTGGCCTGCCACTTCCATAACTGAAGCGGAATCCGGTTACGATAATCACCGATTTTTGTATCGAATTGACAAACATAAACAGGATAAAGGACAGCCTCATTGGCAAGAAATTCTCCCTAAATTCGGCGATGTTAACAAAGCTGCGCCCGGAATTCCTATCGAACAACCTACTCGCAATGCTGTTGATTCATCAGCAGGTGGAAAAGGCGGTAGGAAGGTCTCTTCTGATAGCAAGCCTGAATCTTTTGACTCGGGTTGTGCTCTCTATCTTCTGTCAACACTTCAAACACAAAGTTCAGAGTTGAGTTTGATGCAGTCAAGCATCAACAACAGTCCAACAGAATCTTCGTCTGGAACGGTGCATTTCGATGCGATGAATGAGTACTCATTCTCAGGAAAGGCGAAAGATAAGCCTAATAATGGTTCAGTTTTTGTTCTCGATGGAAACACAACAAACCTTCATTGCAATGGGATGCTGCAAATGGGGCCTAATAGTTTGGTTGAAAATGAAAACTCGCTCACACTTCCATTTTTCTGGGAGTAA 1101 0.4214 MDWDWKEFAWDPSGLEDLKNEGDSVDLRLGEASDSLEKSVQDTGKEDLKAVSSFSGSSKRLRLQNGSQNMICSVDGCNADLSDCREYHKRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLTEFDDVKRSCRKRLDGHNKRRRKPQPPSLFMAAEKFMYNYKGPRILHFGSPQAYVNVNPIMRNIWPATSITEAESGYDNHRFLYRIDKHKQDKGQPHWQEILPKFGDVNKAAPGIPIEQPTRNAVDSSAGGKGGRKVSSDSKPESFDSGCALYLLSTLQTQSSELSLMQSSINNSPTESSSGTVHFDAMNEYSFSGKAKDKPNNGSVFVLDGNTTNLHCNGMLQMGPNSLVENENSLTLPFFWE 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00625 366 Pfam SBP domain 72 145 IPR004333 GO:0003677
Trre13g00625 366 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 32 301 IPR044817 GO:0003677
Trre13g00625 366 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
Trre13g00625 366 SUPERFAMILY SBT domain 70 151 IPR036893 GO:0003677|GO:0005634
Trre13g00625 366 MobiDBLite consensus disorder prediction 235 267 - -
Trre13g00625 366 Gene3D - 63 133 IPR036893 GO:0003677|GO:0005634
Trre13g00625 366 FunFam Squamosa promoter-binding-like protein 14 63 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00625 Trre-Chr13 4867600 4870278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00625 68 195 SBP-box Gene Family AT5G50670 53.125 4.05e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre13g00625 SBP 4.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00625 - - lja:Lj1g3v3847150.1 523.857