Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00624 ATGTTGTTTCCTTGTCCTCCTTCTTCTTCTAGCTACCAAAATCCAATTACAAGTGGTTTGAATAATGGTCAAAGTTCAAATGCATTTCTTGGTTTGAAGACTAATAATAATGATCAAATTATTAGTGTTAATCATGATCATGAAGATGAAAAAAGAGGTGAAGGGAGTGTTAATGATCAACAAGGTGTTAAAAAGAAAGGAGAGAAAAAAGCTAAGAAGCCTAAATATGCTTTTCAAACTAGGAGTCAAGTTGATATACTTGATGATGGTTATAGATGGAGAAAATATGGACAAAAAGCTGTTAAAAACAACAAATTTCCCAGGAGCTACTATCGGTGCACACATCAAGGATGCAATGTAAAGAAACAAGTGCAACGCTTAACCAAAGATGAGGGAGTAGTTGTGACAACTTATGAAGGAGTGCATAATCACCCTATTGAGAAAACAACCGATAACTTTGAGCATATTTTGAGTCAGATGCAAATATACACACCCTTTTGA 501 0.3453 MLFPCPPSSSSYQNPITSGLNNGQSSNAFLGLKTNNNDQIISVNHDHEDEKRGEGSVNDQQGVKKKGEKKAKKPKYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHNHPIEKTTDNFEHILSQMQIYTPF 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00624 166 MobiDBLite consensus disorder prediction 1 31 - -
Trre13g00624 166 FunFam WRKY transcription factor 57 73 147 - -
Trre13g00624 166 SUPERFAMILY WRKY DNA-binding domain 79 146 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g00624 166 MobiDBLite consensus disorder prediction 46 75 - -
Trre13g00624 166 ProSiteProfiles WRKY domain profile. 82 147 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g00624 166 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 25 149 IPR044810 GO:0003700
Trre13g00624 166 Gene3D WRKY domain 72 146 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g00624 166 MobiDBLite consensus disorder prediction 46 66 - -
Trre13g00624 166 Pfam WRKY DNA -binding domain 88 145 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g00624 166 SMART WRKY_cls 87 146 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00624 Trre-Chr13 4853093 4856530 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00624 19 166 WRKY Transcription Factor Family AT5G13080 64.901 3.23e-60 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g00624 WRKY 1.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00624 - - psat:127128225 251.521