Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00623 ATGGAAAACAATTATTCCATGTTGTTTCCTTGTCCTCCTTCTTCTTCTAGCTACCAAAATCCAATTACAAGTGGTTTGAATAATGGTCAAAGTTCAAATGCATTTCTTGGTTTGAAGACTAATAATAATGATCAAATTATTAGTGTTAATCATGATCATGAAGATGAAAAAAGAGGTGAAGGGAGTGTTAATGATCAACAAGGTGTTAAAAAGAAAGGAGAGAAAAAAGCTAAGAAGCCTAAATATGCTTTTCAAACTAGGAGTCAAGTTGATATACTTGATGATGGTTATAGATGGAGAAAATATGGACAAAAAGCTGTTAAAAACAACAAATTTCCCAGGAGCTACTATCGGTGCACACATCAAGGATGCAATGTAAAGAAACAAGTGCAACGCTTAACCAAAGATGAGGGAGTAGTTGTGACAACTTATGAAGGAGTGCATAATCACCCTATTGAGAAAACAACCGATAACTTTGAGCATATTTTGAGTCAGATGCAAATATACACACCCTTTTGA 519 0.343 MENNYSMLFPCPPSSSSYQNPITSGLNNGQSSNAFLGLKTNNNDQIISVNHDHEDEKRGEGSVNDQQGVKKKGEKKAKKPKYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHNHPIEKTTDNFEHILSQMQIYTPF 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00623 172 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 31 155 IPR044810 GO:0003700
Trre13g00623 172 MobiDBLite consensus disorder prediction 52 81 - -
Trre13g00623 172 Pfam WRKY DNA -binding domain 94 151 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g00623 172 SUPERFAMILY WRKY DNA-binding domain 85 152 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g00623 172 MobiDBLite consensus disorder prediction 1 39 - -
Trre13g00623 172 ProSiteProfiles WRKY domain profile. 88 153 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g00623 172 FunFam WRKY transcription factor 57 79 153 - -
Trre13g00623 172 Gene3D WRKY domain 78 152 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g00623 172 MobiDBLite consensus disorder prediction 52 72 - -
Trre13g00623 172 SMART WRKY_cls 93 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00623 Trre-Chr13 4853075 4856530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00623 25 172 WRKY Transcription Factor Family AT5G13080 64.901 3.96e-60 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g00623 WRKY 1.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00623 - - psat:127128225 263.077