Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00616 ATGATGAAATTCAGCTACAGTTCAAATCTGTTCTCTGTTTGGTTCATTCTGTTTTTGTATTTCTTACATGCTACTATTGCCATAGACAAAATTACATCATCATCATCATCATCTCAATTCATGAAGGACCATGAAACTCTAATCTCCAAAGATGGTAACTTTACATTTGGATTCTTTACCCCAATAAATTCTACGAACCGCTACGTCGGAATTTGGTGGAAGTCTGAATTCACAAACATATGGGTGGCTAACAGAAACCATCCACTGAAAGATTCTAATGGTACTGTCACAATATCTAATGATGGAAATCTTGTGGTATTGAATGGAGAAAAACAAGTCATTTGGTCATCAAATGTTTCCAACATAGCATCTTCTAATAGTACTGTCGAGTTTTCGGAGTTCGGTAACCTTGTTCTTTTGGATAGCACAAGTGGAAAGATGTTATGGCAGAGTATTCAGCAACCATCAAATACATTACTGCCTGGTACGAAACTTTCTATCGACAAAAGAACAGGTGAGAAAATCAGACTAAGATCATGGAAAAGTCCTTCTGATCCATCTTTTGGGAGTTTTTCTACTAGTATTGTTGAACGGAGAAATATACTCGAAATTTTTATTTGGAATGAAACTCGAACGTATTGGCGTAGTGGACCTTGGAATGGTGGAGTTTTTACAGGAATATCAAGTAGGACAGATGAACATTTTTATGGTTTTCAAGGTGGAAATGATGGAGGAGGGAATTTAAATCTATATTATACGATCCCAAATGGCGTGGCATTTGTGATCTATGTCCTGAATTCACAAGGAGAAATAGAATCGACATTGTGGGACGATGTGAAGAAAGAAGTGAAAGTTACATGGGCTAATCGAGAATCGGAGTGTGACAGTTACGGTATATGTGGGATATTTGCAAGTTGTAGCTCACTGAGTTCGCCGATTTGCACCTGTTTGAAAGAATTTGAACCTAAGACTATTCAAGAATGGAATAGAAACAATTGGACCGGCGGTTGTGTTAGGAAGACACCTTTGCAGTGTGAAAGGATCGACAATACAAAGGATGAAGACGACGTGTTTTTGAAATTGCAGATGGTTAAAATTCCTGATTTTGCAGAAGGTGTAGCTGTTACACCAGATATATGCAGAAGCTTATGCTTGCATAATTGCTCTTGCGTCGCGTATGCTCATGATGCTGGGATTGGTTGTATGTCTTGGACTAGGAATCTACTCGATATACAACTACTCAAAAGTGGAGGACTCGATCTATATGTTCGTGTAGCCCGTGAAGAACCTCATAGAGGGAGAAACAAAACTATCATCATTACAATATCAGTGATAATAGGAACTCTCATAACAATCCTTTTTGCATATCTCATGTGGAGAAGGGCTTCAAAAAACTCAGATAAATCAACATGGAAAAAGATCAACAAAGCTTTCTCACAATTTAATAAAAGTGGAACTGGAACACCAGAACAAAATAATAGTGACAATGTATTTGGAGAAGGAGGACTATCACAAGTTAGCTTACAGGAGCTATTATTATTTGATTTTGAAAAGCTTGCAACTGCCACAAACAACTTCCACTTGTCCAACAAACTTGGACAGGGTGGTTTTGGTCCAGTATACAAGGGGAAACTGCAAGATGGTCGAGAAATAGCGGTTAAAAGACTTTCTAGAGCATCTGGTCAAGGGATAGAAGAATTCACGAATGAAGTTGTGGTTCTTTGTAAGCTTCAACATCGTAATCTTGTAAGACTTCTTGGCTGCTGTGTTGATGGTGATGAAAAGATGTTGATGTATGAGTACATGCCAAACAAAAGTTTGGATTCATATATTTTTGATCCATCAAAAAATAAGCTTCTGGATTGGGGAACACGACATAGAATTATAGATGGAATAGCTCGAGGATTGTTGTATCTTCACAGAGATTCGAGACTAAGAATTATACATAGAGATTTGAAAGTAAGTAATATCTTGTTAGACGAGGAGTTGAATCCAAAAATATCGGACTTTGGTATGGCTAGAATCTTTGGAGGGAGAGAAGATCATGCTGATACAAATAGGGTTGTCGGAACTTATGGCTATATGTCTCCTGAATACGCAATGCAAGGACACTTTTCAGAGAAATCAGATGTTTTTAGCTTTGGTGTTTTGATACTTGAGATCATTATTGGTAGAAGAAACTCAAGCTTTAATGGCAATGAGCATGCTCTGAGTCTTTTAGGATTTGTATGGATTCAATGGAGGGAAGACAATATTTTATCTTTAATAGATCCAGAAATATATGATCATAATCATCATAAGAATATTTTGATATGCATACATGTAGGACTTTTATGTGTACAAGAATCAGCTGTAGATAGACCTACTATGGCTACAGTAATTTCTATGCTCAATAGTGAGGTTGCATCTCTTCCTCCTCCAAGTGAACCTGCATTCATCCTGAGGCAGAATATGTTGAATTCAAAGTCCCCTGAAGAAAATCAAAGCGCAATTTCCATTAATAATGCCAATATTACACACGTATGTGGTAGATAA 2535 0.3724 MMKFSYSSNLFSVWFILFLYFLHATIAIDKITSSSSSSQFMKDHETLISKDGNFTFGFFTPINSTNRYVGIWWKSEFTNIWVANRNHPLKDSNGTVTISNDGNLVVLNGEKQVIWSSNVSNIASSNSTVEFSEFGNLVLLDSTSGKMLWQSIQQPSNTLLPGTKLSIDKRTGEKIRLRSWKSPSDPSFGSFSTSIVERRNILEIFIWNETRTYWRSGPWNGGVFTGISSRTDEHFYGFQGGNDGGGNLNLYYTIPNGVAFVIYVLNSQGEIESTLWDDVKKEVKVTWANRESECDSYGICGIFASCSSLSSPICTCLKEFEPKTIQEWNRNNWTGGCVRKTPLQCERIDNTKDEDDVFLKLQMVKIPDFAEGVAVTPDICRSLCLHNCSCVAYAHDAGIGCMSWTRNLLDIQLLKSGGLDLYVRVAREEPHRGRNKTIIITISVIIGTLITILFAYLMWRRASKNSDKSTWKKINKAFSQFNKSGTGTPEQNNSDNVFGEGGLSQVSLQELLLFDFEKLATATNNFHLSNKLGQGGFGPVYKGKLQDGREIAVKRLSRASGQGIEEFTNEVVVLCKLQHRNLVRLLGCCVDGDEKMLMYEYMPNKSLDSYIFDPSKNKLLDWGTRHRIIDGIARGLLYLHRDSRLRIIHRDLKVSNILLDEELNPKISDFGMARIFGGREDHADTNRVVGTYGYMSPEYAMQGHFSEKSDVFSFGVLILEIIIGRRNSSFNGNEHALSLLGFVWIQWREDNILSLIDPEIYDHNHHKNILICIHVGLLCVQESAVDRPTMATVISMLNSEVASLPPPSEPAFILRQNMLNSKSPEENQSAISINNANITHVCGR 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00616 844 Pfam Protein kinase domain 526 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00616 844 SMART ntp_6 353 425 IPR003609 -
Trre13g00616 844 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 186 IPR036426 -
Trre13g00616 844 CDD PAN_AP_plant 341 426 - -
Trre13g00616 844 SMART serkin_6 526 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00616 844 ProSiteProfiles PAN/Apple domain profile. 345 426 IPR003609 -
Trre13g00616 844 Pfam PAN-like domain 353 411 IPR003609 -
Trre13g00616 844 CDD STKc_IRAK 532 798 - -
Trre13g00616 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Trre13g00616 844 FunFam receptor-like serine/threonine-protein kinase SD1-8 500 601 - -
Trre13g00616 844 SUPERFAMILY Protein kinase-like (PK-like) 507 797 IPR011009 -
Trre13g00616 844 ProSiteProfiles Bulb-type lectin domain profile. 32 152 IPR001480 -
Trre13g00616 844 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 788 - -
Trre13g00616 844 Gene3D - 27 153 IPR036426 -
Trre13g00616 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 152 - -
Trre13g00616 844 ProSiteProfiles Protein kinase domain profile. 526 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g00616 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 602 805 - -
Trre13g00616 844 CDD B_lectin 42 151 IPR001480 -
Trre13g00616 844 Pfam S-locus glycoprotein domain 214 323 IPR000858 GO:0048544
Trre13g00616 844 SMART blect_4 38 155 IPR001480 -
Trre13g00616 844 Gene3D Phosphorylase Kinase; domain 1 490 601 - -
Trre13g00616 844 PIRSF SRK 1 844 IPR024171 GO:0004674
Trre13g00616 844 Gene3D Transferase(Phosphotransferase) domain 1 602 804 - -
Trre13g00616 844 Pfam D-mannose binding lectin 78 181 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00616 Trre-Chr13 4778996 4782727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00616 423 821 Receptor kinase-like Gene Family AT4G21410 52.840 1.12e-126 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre13g00616 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00616 - - mtr:25498365 1201.81