Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00613 ATGGATCCCAAAAACTCAAAACAAACACAACTTGCAAACACCAACAACAACATGGGAGAAAACAAACAACAATCTGATTCAAAAAACCTTCAAATTGTGTTATCTGAAACAAACAACAACAACAACAAAGATTCAGAAACAAAAAAACAACTTGCACCAAAAAGAACATCAAACAAAGACAGACACACAAAAGTTGAAGGACGAGGTAGAAGAATAAGGATGCCAGCTTTATGTGCTGCTAGAATTTTTCAACTCACAAGAGAATTAGGTCATAAATCAGATGGTGAAACAATTCAATGGCTTCTTCAACAATCTGAACCATCAATTATAGCTGCAACTGGAACAGGAACAATTCCAGCTTCAGCTTTATCTTCATCTTCAAACACTTTAACAACAACAAACCAAGTTTCATCTTTATCTTCTGGTTTACAGCTTGATAGAACTAATTGGGCTCAGGCCCATCAACAAGCCCATCATGTTACTTCATCAAATTTATGGCCTCATCATCATGGATTTGGTTTTCAATCATCATCATCATCATCTACTAGTGAAAATAATAATAGTTCAAATTATTTTCAAAAAATTGGTTTTTCTGGTTTTGATATGCCAACATCAGCAACTAATTTGGGTGGAATGAGTTTTACATCAATTTTGGGTGGAAATCAACAGATGCCTGGTTTGGAATTAGGATTATCACAAGATGGACATATTGGTGTGTTGAATCAACAAGCTTTGACTCAGATTTATCAACAAATTGGTCAAAATCAAACTAGGGTTCATCAGCACCAGAATCCTACTAAAGATGATTCTCAAAGTTCAGGACAGTAG 828 0.349 MDPKNSKQTQLANTNNNMGENKQQSDSKNLQIVLSETNNNNNKDSETKKQLAPKRTSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPASALSSSSNTLTTTNQVSSLSSGLQLDRTNWAQAHQQAHHVTSSNLWPHHHGFGFQSSSSSSTSENNNSSNYFQKIGFSGFDMPTSATNLGGMSFTSILGGNQQMPGLELGLSQDGHIGVLNQQALTQIYQQIGQNQTRVHQHQNPTKDDSQSSGQ 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00613 275 MobiDBLite consensus disorder prediction 1 70 - -
Trre13g00613 275 Pfam TCP family transcription factor 56 172 IPR017887 -
Trre13g00613 275 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 13 271 IPR005333 GO:0003700
Trre13g00613 275 ProSiteProfiles TCP domain profile. 58 112 IPR017887 -
Trre13g00613 275 MobiDBLite consensus disorder prediction 47 70 - -
Trre13g00613 275 MobiDBLite consensus disorder prediction 1 46 - -
Trre13g00613 275 MobiDBLite consensus disorder prediction 255 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00613 Trre-Chr13 4756773 4757600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00613 1 275 TCP Transcription Factor Family AT3G27010 48.457 2.76e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre13g00613 TCP 2.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00613 - - psat:127128219 370.548