LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g00603	ATGTATTTCTTATCAAACCTTGATCAAAACATTGCTGTAATTGTAAGAACTGTTTATTGTTTTAAAAATGAAGAGAAAGGAAATGAGAATGCTAATGAAGTGATTAAGAATGCATTAAAGGATGTTCTTGTTTATTATTATCCTCTTGCTGGGAGATTAAGTATAAGCTCAGAGGGTAAACTGATTGTGGATTGTACTGGAGAAGGTGCTCTTTTTGTTGAAGCTGAAGCTAATTGTTCAATGGAAGAAATTGGTGATATTACAAAACCTGATCCTAGGACTCTTGGTATGTTGGTTTATGATATTCCTGATGCTAAACATATTCTTCATATGCCTCCTTTGGTTGCTCAGGTAACCAAGTTTAAGTGTGGAGGTTTTTCTCTTGGACTATGCATGAATCATTGCATGTTTGATGGCATTGGAGCTATGGAGTTTGTGAACTCATGGGGAGAATTAGCAAGAGGCCAACCACTCTCAATCCCTCCAGTTCTAGACAGAACCATTCTAAAGGCGCGCAATCCGCCAAAGATAGAACATTTGCACCAAGAATTTGCTGATATTGAAGACAAATCAAATACAAATAGCTTATATGAAGATGAAATGGTGTATAGATCATTTTGTTTTGATCTTGAGAAACTAAAAGAATTGAAGAAAAAAGCTATGGAAGATGAAAATGGTGTTCTTCAATCTTGCACAACATTTGAAGTTCTTTCAGCATTTGTTTGGATAGCTAGAACAAAAGCACTTAAACTTTTGCCAGAACAAGAAACTAAGCTTCTTTTTGCTGTTGATGGAAGGGCTAAATTTGAACCAAAACTTCCAAAAGGGTATTTTGGGAATGGAATTGTACTTACAAAATCGGTTTGTAAAGCAGGTGAAATTACGAACAAGCCCTTATCGTATACGGTGAAGGCTATTCAAGAAGCAATTAAGAGTGTCACAGATAGTTACATGAGATCAGCTATTGATTATTTTGAGGTAACAAGAGCTAGGCCTTCTTTGGCTTGTACACTTTTGATCACAACTTGGTCGCGGCTTCCGTTTCATACCACCGATTTCGGTTGGGGAGAACCTGTTCTGTCTGGACCGGTTTCGTTGCCCGAGAAGGAAGTGATTTTGTTCCTTTCACATGGTCAAGAGAGGAGAAGCATTAATGTGCTTCTTGGTTTACCTGCTCCTGTCATGAAGATCTTTCAAGATTTGATGCAGATATAG	1215	0.3745	MYFLSNLDQNIAVIVRTVYCFKNEEKGNENANEVIKNALKDVLVYYYPLAGRLSISSEGKLIVDCTGEGALFVEAEANCSMEEIGDITKPDPRTLGMLVYDIPDAKHILHMPPLVAQVTKFKCGGFSLGLCMNHCMFDGIGAMEFVNSWGELARGQPLSIPPVLDRTILKARNPPKIEHLHQEFADIEDKSNTNSLYEDEMVYRSFCFDLEKLKELKKKAMEDENGVLQSCTTFEVLSAFVWIARTKALKLLPEQETKLLFAVDGRAKFEPKLPKGYFGNGIVLTKSVCKAGEITNKPLSYTVKAIQEAIKSVTDSYMRSAIDYFEVTRARPSLACTLLITTWSRLPFHTTDFGWGEPVLSGPVSLPEKEVILFLSHGQERRSINVLLGLPAPVMKIFQDLMQI	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g00603	404	Gene3D	-	184	403	IPR023213	-
	Trre13g00603	404	Pfam	Transferase family	3	401	-	-
	Trre13g00603	404	FunFam	Spermidine hydroxycinnamoyl transferase	1	184	-	-
	Trre13g00603	404	Gene3D	-	1	183	IPR023213	-
	Trre13g00603	404	PANTHER	TRICHOTHECENE 3-O-ACETYLTRANSFERASE	2	400	-	-
	Trre13g00603	404	FunFam	Tryptamine hydroxycinnamoyl transferase	188	403	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g00603	Trre-Chr13	4661505	4663636	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g00603	17	402	Monolignol Biosynthesis Gene Families	AT5G48930	35.750	3.96e-82	256

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g00603	K15400		-	gmx:100804504	699.893