Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00598 ATGGCATCCCAATCCTCTTGCAGCTCTTCCAATGTACAACATCTTAACAAACAAAATCAACTTCCAAACTCCAATTCTGCAGTGCAAGAGCACAACTTTTTTAGCCATGTTCAAGTTGGTTCTTCATCTGATTTTCCTAATAACAATGAAGGAAAATATGAGAACAACAATGAAAAGAAAAATTCTAATTCAAAGATTTATTCATGCAACTATTGCAAGGGTCAATATTCTTCTGTACAAGCATTAGGAGGACACCAAAATGCTCACAAAACAGAACGTGCGTTACAAATGCAACTAATCAAACAAAAGCCACGTGGAATTAGAATGGAATCAATAATTGAAAAATCACCTTATATTAGCCCTAGAATTGGTCATGGTACTTTTACACCTTTTAACTATAGATCACTTGGGGTTAGAATGGAATCGATGATTAAAAAAGAATCACCTTGTATTAGCCCTAGGATTGGTAATGGTAATTTGGGTTTGCATGATATATTAAACCCTTCTCTTCTTAGCTTGAGAAATAATATTAAGGGAAGTAATGGTGGGGTTGCAAGTCTAGGTATTGGTGGTGCAACTACTTCAACAAATATTGTGGCTCCTACTTCTACCATGGATGGCATTCGCAAGTTAAAGTCAAGTGATTTTGATTCTTCTCGGATTGATCTATCACTTAAGCTTTAA 684 0.3538 MASQSSCSSSNVQHLNKQNQLPNSNSAVQEHNFFSHVQVGSSSDFPNNNEGKYENNNEKKNSNSKIYSCNYCKGQYSSVQALGGHQNAHKTERALQMQLIKQKPRGIRMESIIEKSPYISPRIGHGTFTPFNYRSLGVRMESMIKKESPCISPRIGNGNLGLHDILNPSLLSLRNNIKGSNGGVASLGIGGATTSTNIVAPTSTMDGIRKLKSSDFDSSRIDLSLKL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00598 227 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 18 227 IPR044246 GO:0009788
Trre13g00598 227 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Trre13g00598 227 MobiDBLite consensus disorder prediction 38 60 - -
Trre13g00598 227 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 94 IPR013087 -
Trre13g00598 227 SUPERFAMILY beta-beta-alpha zinc fingers 63 95 IPR036236 -
Trre13g00598 227 Gene3D Classic Zinc Finger 42 116 - -
Trre13g00598 227 MobiDBLite consensus disorder prediction 38 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00598 Trre-Chr13 4638539 4639312 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00598 56 148 C2H2 Transcription Factor Family AT5G25160 41.667 6.69e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00598 - - tpra:123892087 205.297