Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00597 ATGGCTTCCCAATCCTCTAGCAGTTCTTCCAATGTACAACATCTTAACAAACAAAATCAACTTCCAAACTCCAATTCTGTAGTGCAAGAGCACAATTTTTTCTGCCATGTGCAAGTTGGTTCTTCATCTGCTTTTTCTAATAACAATGAAGGAAAAGATGAGAGTAACAACGAAAAGAATAATTCTGATTCAAAGATTTATTCATGCAACTACTGCAAGGGTCAATATTCTTCTTTACAAGCATTAGGAGGGCACCAAAATGCCCACAAAGCAGAACGTGCGTTACAAATGCAACTAATCAAACAAAAGCCACTCGGGGTTAGAATGGAATCATCCATTCAAAAATCACCTTGTATTAGCCCTAGGATTGGTCTTGGTGCTTTGCGTTTGCATGATATATTAAACCCTTCTCTTGTTAGCATGAGAAATAATATTGAGGGAAGTAATGGTGGGGTTGCAAGTCCAGGTATCGGTGGTGCAACTACTTCTGCAAATGTGGTGGCTCCTACTTCTACCGTGGATGGCATTCGCAAGTTAAAGTCAAGTGATTTTGATTCTTCTGGACTTGATCTGTCACTAAAGCTTTAA 588 0.3912 MASQSSSSSSNVQHLNKQNQLPNSNSVVQEHNFFCHVQVGSSSAFSNNNEGKDESNNEKNNSDSKIYSCNYCKGQYSSLQALGGHQNAHKAERALQMQLIKQKPLGVRMESSIQKSPCISPRIGLGALRLHDILNPSLVSMRNNIEGSNGGVASPGIGGATTSANVVAPTSTVDGIRKLKSSDFDSSGLDLSLKL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00597 195 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 94 IPR013087 -
Trre13g00597 195 SUPERFAMILY beta-beta-alpha zinc fingers 63 95 IPR036236 -
Trre13g00597 195 Pfam C2H2-type zinc finger 67 91 - -
Trre13g00597 195 Gene3D Classic Zinc Finger 43 116 - -
Trre13g00597 195 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Trre13g00597 195 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 13 96 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00597 Trre-Chr13 4625551 4626279 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00597 48 95 C2H2 Transcription Factor Family AT1G24625 45.833 1.72e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00597 - - tpra:123892087 173.326