Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00596 ATGGCATTTCAATCCTCTAGCAGTTCTTCCACTTCACAAAATCAAGATGGGAACAATCAAAATGAACTTCCAAACTCTAATTCTAGAGTTGGCTCTTCATCCGATTTTCCCAATAGCAATGAAGGAAATGATGTGAACAACAATGAAAAGAAAAATTCTGAATCAATGATGTATTCATGCAAGTACTGCAAGGGCCAATATTCAACTTTACAGGCGTTAGGAGGACACCAGAATGCGCATAAAGCAGAACGTGCATTAAAAAAGCAGCAAATTAAACAAAGGTATGAAGGTGGTACTTTAAATTTTGGGCAACCTAGTTTTAACCCTTATTTAAATTATCCTAGGGCTACTCGTTTTACACCTTATAACTATAACTATAGACCACTTGGGGTAAGATTGGATTCATTGTATCAAAAAACACCTCATATTAGCCCTAGGTTTGGTCATGGTGCTTTTAAACCTTATATTAATAATCATAGGCCAAGGATTGGTACTGGTCTTGGTTCTTTGTCTTTGCAAGATATACTTAACCCGAATCTTGTTACCCTAAGAAATAATATTCAGGGTAGTAATAGTGGGGGTGCAAGTCTAGGTATTGGTGGAGCAAATACTTCAAGAACTGAAGATGAAGTTGGTACAAATAATCCAAATGCTGCTATTCTAATGTTTGGAGAATCTTCAACAAATAATGTGGCTCCTAATTCCACTATGGGTGACATTGATGATTCAAAGTCAAACATTGAAGAAGAACCATCTGATTCCGATTCTTCTGGGCTGGATCTGACGCTCAAGCTTTAA 798 0.3684 MAFQSSSSSSTSQNQDGNNQNELPNSNSRVGSSSDFPNSNEGNDVNNNEKKNSESMMYSCKYCKGQYSTLQALGGHQNAHKAERALKKQQIKQRYEGGTLNFGQPSFNPYLNYPRATRFTPYNYNYRPLGVRLDSLYQKTPHISPRFGHGAFKPYINNHRPRIGTGLGSLSLQDILNPNLVTLRNNIQGSNSGGASLGIGGANTSRTEDEVGTNNPNAAILMFGESSTNNVAPNSTMGDIDDSKSNIEEEPSDSDSSGLDLTLKL 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00596 265 MobiDBLite consensus disorder prediction 226 241 - -
Trre13g00596 265 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 11 265 IPR044246 GO:0009788
Trre13g00596 265 MobiDBLite consensus disorder prediction 226 265 - -
Trre13g00596 265 Gene3D Classic Zinc Finger 33 101 - -
Trre13g00596 265 MobiDBLite consensus disorder prediction 192 214 - -
Trre13g00596 265 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Trre13g00596 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Trre13g00596 265 Pfam C2H2-type zinc finger 58 82 - -
Trre13g00596 265 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00596 Trre-Chr13 4620861 4621658 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00596 45 139 C2H2 Transcription Factor Family AT5G25160 37.500 5.66e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00596 - - tpra:123892087 247.669