Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00595 ATGGCATCCGGCAGCTCTTCGAACAACAATGAAGAGAATAATTCAAATTCAAGGGTTTATTCATGCAACTATTGCCATTTCCAATTTTCGACTCAACAAGCGTTAGCAGGGCATCAAAATGCTCATAAGGCACAACGTGCATTCGAGAAGCAACTGAAAGAAAGGTATGATGGTCAAACTTCAAATTTTGGGCAACCTTTATTTAACCGTCCTTTTAATTATACTGGAAGTTTTTTACCACCCTATAGCTATAGCTATAGGTCACTAGGGGTTCACAATGAATCGACGATTCATACACAACCGTCAGTTCGCCCTATAATTGGTCATCGTGGCGGTTTGAGTTTGACTGATATTTTTAATCCTCCTCTAATTAATTTGAAAAATAATATTGAGGGTAGTACTAGAGGGGTTGGAGTTCAAGGTATTGGTGGTGCAACTACTTCAAGGACTGAAAATCATGGAACAAATTTTAAATTTCATGATTTTCTTAATCTTGGAGTATCTTCCGACAATGTTGGTACAAGTTCAAACTCGACCATGGCTAAGGAAGGTATCCAAAATTCAAAGTCAAAAGATGAAGATGAATCCTCTGATTCTGGATCATCCGAGCTTGATTTAACACTCAAGCTTTAA 633 0.3776 MASGSSSNNNEENNSNSRVYSCNYCHFQFSTQQALAGHQNAHKAQRAFEKQLKERYDGQTSNFGQPLFNRPFNYTGSFLPPYSYSYRSLGVHNESTIHTQPSVRPIIGHRGGLSLTDIFNPPLINLKNNIEGSTRGVGVQGIGGATTSRTENHGTNFKFHDFLNLGVSSDNVGTSSNSTMAKEGIQNSKSKDEDESSDSGSSELDLTLKL 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00595 210 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 47 IPR013087 -
Trre13g00595 210 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 210 IPR044246 GO:0009788
Trre13g00595 210 MobiDBLite consensus disorder prediction 173 210 - -
Trre13g00595 210 SUPERFAMILY beta-beta-alpha zinc fingers 16 49 IPR036236 -
Trre13g00595 210 Gene3D Classic Zinc Finger 4 65 - -
Trre13g00595 210 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00595 Trre-Chr13 4614693 4615376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00595 9 118 C2H2 Transcription Factor Family AT5G25160 32.727 4.28e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g00595 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00595 - - tpra:123892089 180.644