Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00594 ATGATCAATTCACTTTGTGGAAGCTCAAATTCCCACAAAGAAAAATGTCTTCAACCCACTTCTTCAAATCATACAAATATACTTTCAAAGAAAAATACCACAAATTCTAGTGATGATATAGATCAAATTAATATTTTAACCCCACAAAGCTTAAACCTTCCATCACTCAAATTTGACTTAGATGGTGACGTGGAAGTCCAATCACCAGATAGTTCAATGTGGGAATCATTTTTCAATGACCATTTAGATATTAATAATGATTTTATGATATCTTCACCTATTAGAAATATTAACCCTAACTCACCACAAGCTTCTACTTACAATAATAATTGTAGTAATTATAATAATAGTAGTAACTATGCTCAAGGAATGCAAATTCAAACTTTTTCACCACCTCGTTTTGCATCACATATTGGAGCATTAAATAATAGTAGTAATAATCAACAAAAAGGGAAAGGACTTAGTCCACTTCATAGAGTTTTTAATTCACCAAATAATCAATATATGCAACATGTTGAAAATCTTTCTTTGCCAGCTATTGAAGAGTTCTTAGAAGATTATCAAGGTGATGTTGATTTTTCATCAACAAAAATATCTTCTTCTGATCAATGTTTTGATATGGAAACTCCAATTTCAACAATTTTGGATAGTTTATCAATGCAAAATTCATCATCATCAAGATATTGTGGTTCTATTAATGAAGAATCCTCAGTTTTGCATGGTGGTAATTCTTCACAAGAGAGTGATATTTATCATCAAATGGGATCTATGGCTAGTGCATCACTTTCACAAGCTTTACAACAAGAAAGGTATCAAGAGAAACATCAAAAATTGCAAGCACAACAACAGAGTCTAACAGTTCCTATTCCAATTGGAATTGAACAGGAACAAGACAGTGGACTTCAGCTAGTGCACTTGCTTCTAGCTTGTGCTGAAGCAGTAGCAAAAGAAGAATACATGCTAGCAAAAAGGTACCTACATCAGCTCAATAGAGTAGTAACACCACTAGGTGACTCCATGCAACGTGTAGCTTCATGTTTTACAGAATCTCTAAGTGCAAGACTCGCCGCAACCCTAACAACAAAGACATCATCAAACAAAAAGTCAACAACAACACCATCATCATCAACATCCTCCTCATCATCATGTTTTTCTAGCTTCCCATCAAACCCTATGGAAGTTCTCAAGATCTACCAAATCGTTTACCAAGCTTGTCCTTACATCAAATTTGCACACTTCACAGCTAACCAAGCGATTTTCGAGGCGTTTGAGGCCGAAGAGCGTGTCCATGTTATTGACCTTGATATTCTCCAGGGTTACCAATGGCCTGCTTTTATGCAGGCATTGGCTGCACGGCCTGGCGGTGCTCCGTTTCTACGGATCACCGGTGTAGGGCCGTGCCTTGAAGCTGTTAGAGAAACTGGACGATGCTTAACCGACTTAGCTCATTCTCTTCGTATCCCCTTCGAGTTCCACTCCGTTGGAGAACAACTTGAGGATCTAAAACCGCACATGTTTCACCGCCGTGTAGGAGAGGCGTTAGCGGTTAACACCGTTAACCGGCTTCACCGTGTTCCTGGAAATCATCTTGGGAACTTGTTGTCCATGATAAGGGACCAAGCACCGAACATAGTGACGCTTGTCGAGCAAGAAGCAAGCCATAATGGACCATATTTTTTGGGCCGATTTCTTGAGGCCTTGCATTACTACTCAGCGATTTTCGACTCATTGGATGCAACTTTTCCGGTGGAGTCGGCACCTAGGGCAAAGGTGGAGCAGTATATATTTGCACCGGAGATTCGGAACATTGTGGCCTGTGAAGGGGAGGAGAGGATAGAGAGGCATGAGAGGTTGGAGAAATGGAGGAAGATAATGGAAGGGAAAGGGTTCAAAGGAGTGCCTTTAAGTCCTAATGCGGTGACTCAATCAAGGATATTGTTGGGTTTGTATTCATGTGATGGTTATAGGTTAACTGAGGATAAGGGTTGTTTGTTGCTTGGGTGGCAAGACAGAGCCATCATCGCAGCTTCTGCATGGCGATGCTGA 2046 0.3998 MINSLCGSSNSHKEKCLQPTSSNHTNILSKKNTTNSSDDIDQINILTPQSLNLPSLKFDLDGDVEVQSPDSSMWESFFNDHLDINNDFMISSPIRNINPNSPQASTYNNNCSNYNNSSNYAQGMQIQTFSPPRFASHIGALNNSSNNQQKGKGLSPLHRVFNSPNNQYMQHVENLSLPAIEEFLEDYQGDVDFSSTKISSSDQCFDMETPISTILDSLSMQNSSSSRYCGSINEESSVLHGGNSSQESDIYHQMGSMASASLSQALQQERYQEKHQKLQAQQQSLTVPIPIGIEQEQDSGLQLVHLLLACAEAVAKEEYMLAKRYLHQLNRVVTPLGDSMQRVASCFTESLSARLAATLTTKTSSNKKSTTTPSSSTSSSSSCFSSFPSNPMEVLKIYQIVYQACPYIKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGPCLEAVRETGRCLTDLAHSLRIPFEFHSVGEQLEDLKPHMFHRRVGEALAVNTVNRLHRVPGNHLGNLLSMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPVESAPRAKVEQYIFAPEIRNIVACEGEERIERHERLEKWRKIMEGKGFKGVPLSPNAVTQSRILLGLYSCDGYRLTEDKGCLLLGWQDRAIIAASAWRC 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00594 681 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 244 675 IPR005202 -
Trre13g00594 681 MobiDBLite consensus disorder prediction 1 39 - -
Trre13g00594 681 MobiDBLite consensus disorder prediction 362 384 - -
Trre13g00594 681 ProSiteProfiles GRAS family profile. 294 680 IPR005202 -
Trre13g00594 681 Pfam GRAS domain family 303 680 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00594 Trre-Chr13 4603525 4606237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00594 297 681 GRAS Transcription Factor Family AT1G66350 44.757 4.84e-98 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre13g00594 GRAS 8.7e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00594 - - gmx:100805039 933.71