Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00580 ATGATGGCAGCTGCATTGATAAGGAAACGTGAGTTGTGGCTGTATCGTGATAAGGGGATAGTTGGACCAATACCTAGAGTTTATGTTGGCGATGTTTTTCTTTTTAGGATGGAGTTGTGTGTAGGTGGTTTGCACATGCAAATACAGGCTGGGATTGATTATCTATCCAAGAGTATGTGTTCCAATGGCGAACCAATTGCTACGAGTGTTATTGTCTCGAGCGGTTATAAAGATGACATGGAGTTAGATGATGGAGATGTGATAATACTAACATAA 276 0.4058 MMAAALIRKRELWLYRDKGIVGPIPRVYVGDVFLFRMELCVGGLHMQIQAGIDYLSKSMCSNGEPIATSVIVSSGYKDDMELDDGDVIILT 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00580 91 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 3 91 - -
Trre13g00580 91 SUPERFAMILY PUA domain-like 7 91 IPR015947 -
Trre13g00580 91 Pfam SAD/SRA domain 21 90 IPR003105 -
Trre13g00580 91 SMART G9a_1 17 91 IPR003105 -
Trre13g00580 91 Gene3D - 2 91 IPR036987 -
Trre13g00580 91 ProSiteProfiles YDG domain profile. 22 91 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00580 Trre-Chr13 4518071 4518346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00580 22 91 Su(var)3-9 homologs AT5G04940 54.286 4.20e-15 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00580 - K11420 tpra:123924427 149.443