Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00579 ATGTGCAACACTGATCGTGATCCAAACAAGGGAAAAAAGAAAGTGAATGCGAATAAGACTAAGGAGAGTCAGAACAATGAGAACAAGAGAAAGGCGATTGTTCTAGTAGAATCTGATGTTGAAACAAAAATTTCAAACAATGGTGATGTTGGTGGAGAAGAATCAACAAATTCATCCAAAGAAATTTCTCCATTTCTTCTTTTTGGATTCATTATTGATCCTAATAAAAGAATTAGACATGCTTACTCCTGCAAGTTTTGTAGCCGAAAATTCATTAATCCACAAGCATTAGGTGGCCATCAAAGTTGCCACAAAATGGAGAAAAGACACAAGAAAAGAGCTGAAGACAAAGAGACTCGTGAGGAGGAATTCTCTCTAAACCCAAAATTCACAACGATTCGCCATTGTTTCCGTTCCGTGTTTTTTCTTCATCAACATTCTTCATTGCTCCACTTTTATGTTTTGAGTAAAGTTGGAATTCTATTTGATTAG 492 0.3577 MCNTDRDPNKGKKKVNANKTKESQNNENKRKAIVLVESDVETKISNNGDVGGEESTNSSKEISPFLLFGFIIDPNKRIRHAYSCKFCSRKFINPQALGGHQSCHKMEKRHKKRAEDKETREEEFSLNPKFTTIRHCFRSVFFLHQHSSLLHFYVLSKVGILFD 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00579 163 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Trre13g00579 163 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Trre13g00579 163 MobiDBLite consensus disorder prediction 1 33 - -
Trre13g00579 163 SUPERFAMILY beta-beta-alpha zinc fingers 81 111 IPR036236 -
Trre13g00579 163 Gene3D Classic Zinc Finger 69 134 - -
Trre13g00579 163 PANTHER ZINC FINGER PROTEIN 5 24 121 IPR044299 GO:0010090
Trre13g00579 163 MobiDBLite consensus disorder prediction 102 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00579 Trre-Chr13 4513235 4520195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00579 82 120 C2H2 Transcription Factor Family AT1G68360 53.846 1.36e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00579 - - psat:127129112 140.198