Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00578 ATGGATAAAAATCTCGCTGAAAATTCCACCGACGGAGAACAACAACAACCACCGTCGGAAAATGAAACGGAGGAAGAGAAGAAAAATGAAACCGTAGAAACCGCTGAATCTCCACCTCATAGCCTTGACAAGATTTCAAACGAAATTGATCAATTTCTTGTTGCTAATGAGAATATTGAAGGAGTTTCGATTGAGATTCCTTGTTATGTAGAAACGTTTTTGGATCTTGTGACGGAGAATTTAGCAAAATGTGAAACGGAATGTAAATTGAAATGGGAAGAGATTCTTGTGAAAGATTCATGGTTGCTTGAATCTGTGAATCGGATTTCAAAGCTTAAGAAAATTCTGACTCATCATGATCATGAAAATGAAAGAAGAGATTCGGTATCGAATCGTATTGGTGTAATTCAACAGAAAGCGATGTCGTTTTTGGAAGAAGATTTTCGGTTGTTGATAGAAGATTCTAGAATTCCAACAAATTTGAATCCTGATGGAAACAAGGATGGGGAATCTAATGATCAGAATCAACAGGAAGAATCCGATAAGCATTTCCCGGGTTATACGGACGAGGCGATTGCTTGTATGGGCAAAATTGCCCGAGAGATGTTAAACGGCGGATATGAATCGGAGATTTGTCAGGTCTACATTGTGGCACGAAGGACGGCTTTCGATGAGATTCAACAACAACTAGGGTTGGAAAGAGTCAGCATTGATGATATGGTTCAGAAGGTTCAATGGGAGATTCTAGCAAGAGACATGATTCCGGCGTGGACAAACACGTTTCGTCAATGTGCCGGAGTGTATTTCCCTGGGGAGAAGAAATTAGCCGAGGCGGTGTTCTCAAGTCATCCGTCTGTTGCGGAGGGTTTGTTTAGTAGCCTCTCCCGCGGAGTTGTGATTCCTCTTCTCAACTTTGCGGAAGGGGCTGCTATGACAAAGCGCGCCGGAGAGAAGCTATTCAAATTGCTTGACATGTACGAAACTCTTAGAGATGTTATACCAAAGTTGGATGGACTCTTTCCAGAAGAGTCCTCAGAAGAGTTAAAGACAGAGATAAACCTCGCCAAGTCACGCCTTGGTGAGGCAGTTATCTCTATCTTTTGTGACTTGGAAAATCAAATCAAATCAGAACCTGCAAAGAATCCGGTCCCCGGTGGCGCGGTTCACCCTCTCACACGCTACATAATGAACTACCTTAACATAGCTGGTGATTACAAAGAAACACTTGAACAAGTTTTCAAGAGTCATTCAAAGATCGAACACGCAGATTCAACGGGTACATCTGATCATGATCACAATGAAAACATTATTAAGGAAGCGTCATCACCATTTGCAGCACAAGTAATGAGAGTCATGGAATTACTCGACACAAGCCTCGATGGGAAAGCAAAATTGTACCGCGACGTGGCATTAAGCAACTTCTTCATGATGAACAATGGTAGATACATTTTACAAAAAATCAAAGGGTCAACTGAGTTGAGCCAATTGATGGGTGAAACATGGTGTAGAAGGAAATCTTCTGAATTAAGAAACTACCACAAAACCTACCAAAGAGAAACATGGAACAAAGTGCTAACATGTTTGAGTCATGAAGGGTTGAATGTAAATGGAAAGGTGCAAAAACCAGTACTGAAAGAAAGGTTCAAGAGCTTCAATTCAATGTTTGATGAGATTCATAAGACACAAAGCTCATGGGTTGTGAAGGATGAACAACTTCAATCAGAGCTTCGAGTTTCCATATCGGCCGTGGTGATTCCGGCATACCGGGCATTCATTGGGAGGTTTTCGCAGAATTTAGATGGTGGAAGACAAACAGAGAAATATATTAAGTATCAACCCGAGGATATAGAGACTTATATTGATGAGTTGTTTGATGGAAAACCTCATCAATCTATTGGTAGAAGGAAAACATAA 1914 0.4101 MDKNLAENSTDGEQQQPPSENETEEEKKNETVETAESPPHSLDKISNEIDQFLVANENIEGVSIEIPCYVETFLDLVTENLAKCETECKLKWEEILVKDSWLLESVNRISKLKKILTHHDHENERRDSVSNRIGVIQQKAMSFLEEDFRLLIEDSRIPTNLNPDGNKDGESNDQNQQEESDKHFPGYTDEAIACMGKIAREMLNGGYESEICQVYIVARRTAFDEIQQQLGLERVSIDDMVQKVQWEILARDMIPAWTNTFRQCAGVYFPGEKKLAEAVFSSHPSVAEGLFSSLSRGVVIPLLNFAEGAAMTKRAGEKLFKLLDMYETLRDVIPKLDGLFPEESSEELKTEINLAKSRLGEAVISIFCDLENQIKSEPAKNPVPGGAVHPLTRYIMNYLNIAGDYKETLEQVFKSHSKIEHADSTGTSDHDHNENIIKEASSPFAAQVMRVMELLDTSLDGKAKLYRDVALSNFFMMNNGRYILQKIKGSTELSQLMGETWCRRKSSELRNYHKTYQRETWNKVLTCLSHEGLNVNGKVQKPVLKERFKSFNSMFDEIHKTQSSWVVKDEQLQSELRVSISAVVIPAYRAFIGRFSQNLDGGRQTEKYIKYQPEDIETYIDELFDGKPHQSIGRRKT 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00578 637 SUPERFAMILY Cullin repeat-like 103 625 IPR016159 -
Trre13g00578 637 MobiDBLite consensus disorder prediction 159 183 - -
Trre13g00578 637 MobiDBLite consensus disorder prediction 1 43 - -
Trre13g00578 637 PANTHER EXOCYST COMPLEX PROTEIN EXO70 100 626 IPR004140 GO:0000145|GO:0006887
Trre13g00578 637 Pfam Exo70 exocyst complex subunit 257 622 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre13g00578 637 MobiDBLite consensus disorder prediction 20 34 - -
Trre13g00578 637 Gene3D Exocyst complex component Exo70 93 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00578 Trre-Chr13 4507034 4508947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00578 15 637 EXO70 exocyst subunit family AT5G13990 48.567 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00578 K07195 - gmx:100820172 860.907