Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00534 ATGGTCTTCCCCTCCCTTCCAATCTATCAAGATCCACCCAACTGGTCACCACAGCAAGCAGGAATTGGTATTGGCACTCAAAACTCATCACCTCTGCAACAGCCATCAGCTTCAACGGTGATTGTTACTGTTGAAGCTGATGGCAGCTACCAAGGGTCTATAAGACAAGGATCAATATCCGATCAAGCTAAGATGTCCAAGATACACCAAAATGATGTTGCCGCAACACAAAAGTGTCCAAGATGTGAATCAACAAACACAAAGTTTTGCTACTACAACAATTACAATCTTTCACAACCACGCCATTTTTGCAAAACTTGTCGCCGTTATTGGACTAGAGGAGGTGCACTTAGAAATGTTCCGGTTGGAGGAGGTTGTAGAAGGAATAATAAACGAAGCAAAGGAAATTCAATATCAAAACCAACTTCAAAACCTAATCGTAATGATCATCGCCAGGTCGGTACTGGTGCTAGTGTTGGTGGTTCTAGCTCAGCAAGTGCAAATTCTTCTTCCAATAATGGTTCCACTAATTCTAATGTGAATGTGGGGATCTCCAATTTTCCTACACAATTCCCATTTTTGGCCTCATTGCATCATTATAACAACAATGACTATGTTTCTCAAGGCATTGGTTCTATGGTGGCAAAAAATATTACCAATAGTACTAATACTAGTGTTGAGTTTCAACTTGGTAGTGGTTTTTCAATTGGTAATAGTACTAATGGTGGATCTTTGTTGTTATCAAATGGCATTGGTGAACAATGGAAGTTTTCGAATTCGCTACAAGTCCATCAGCAACAACAACAACAACAACAACAACCAAATTACCAACAATTCCCTTTCTTGACTAGTTCGGAACCACAAATTGGATTATTTCAATTTGGTGGAGAAAATAATGACGAACCTCAACGAAATTTTATTCGTTCTAAGGCAACGGATTCTTCAAGTGTTATAAGTATTGGAATGATGCCTCAAGTTAACACAATAAAAATGGAAGAAAATAATTGTCAAGGGTTGAGTTTGTCAAAAAATCTCTTGAGTGATTCAGAAAATACTAATGATCTACTTTGGAATGGAAATGGAAGTGGTAATGCAAATACATGGAATGAATCTCCTAGTTTCAATCCATCACCTAGTCAATTGTTATGA 1149 0.3803 MVFPSLPIYQDPPNWSPQQAGIGIGTQNSSPLQQPSASTVIVTVEADGSYQGSIRQGSISDQAKMSKIHQNDVAATQKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKRSKGNSISKPTSKPNRNDHRQVGTGASVGGSSSASANSSSNNGSTNSNVNVGISNFPTQFPFLASLHHYNNNDYVSQGIGSMVAKNITNSTNTSVEFQLGSGFSIGNSTNGGSLLLSNGIGEQWKFSNSLQVHQQQQQQQQQPNYQQFPFLTSSEPQIGLFQFGGENNDEPQRNFIRSKATDSSSVISIGMMPQVNTIKMEENNCQGLSLSKNLLSDSENTNDLLWNGNGSGNANTWNESPSFNPSPSQLL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00534 382 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 67 274 IPR045174 GO:0003700|GO:0006355
Trre13g00534 382 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Trre13g00534 382 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Trre13g00534 382 MobiDBLite consensus disorder prediction 12 36 - -
Trre13g00534 382 MobiDBLite consensus disorder prediction 130 177 - -
Trre13g00534 382 MobiDBLite consensus disorder prediction 121 177 - -
Trre13g00534 382 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Trre13g00534 382 MobiDBLite consensus disorder prediction 359 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00534 Trre-Chr13 4105795 4107254 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00534 1 134 C2C2-Dof Transcription Factor Family AT2G37590 49.333 3.31e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre13g00534 zf-Dof 2.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00534 - - cam:101502096 503.056