Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00527 ATGGGCCGTCGAACTCGGCATACCGGATATCATCCACAATCACGGCCAGCCGATTACTCTTCCCGAGCTTGTCGCGGCTCTTCAAATTCCCTAATCGAAAGCCACTTGTTGATGTTGGAGGTGCGCGGAACTGGAAACAGCGCTAAAATTATTTCTGAGGCGTTTCCTACGTTAAAATGTATAGTGTTTGATCTTCCAAATGTTGTAGAAGGTTTAACGGATAATAACTACTTGAGTTTTGTCGGCGGAAATATGTTTGAATCTTTCCTTCAAGCTGATGCGATTTTACTAAAGTGGATTTTGCATGATTGGAATGATGATGATTGTGTGAAGATACTTAAAATTTCTAAAGAAGCTGTTTTAAGGGAAAACAAAGGAGGAAAAGTGATTATAATAGATATTGTGATTAATAAAGAGCAAGATGAACATGAAATGACATAA 441 0.3855 MGRRTRHTGYHPQSRPADYSSRACRGSSNSLIESHLLMLEVRGTGNSAKIISEAFPTLKCIVFDLPNVVEGLTDNNYLSFVGGNMFESFLQADAILLKWILHDWNDDDCVKILKISKEAVLRENKGGKVIIIDIVINKEQDEHEMT 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00527 146 Pfam O-methyltransferase domain 43 143 IPR001077 GO:0008171
Trre13g00527 146 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 43 144 IPR029063 -
Trre13g00527 146 PANTHER O-METHYLTRANSFERASE 41 142 IPR016461 GO:0008168
Trre13g00527 146 MobiDBLite consensus disorder prediction 1 23 - -
Trre13g00527 146 Gene3D Vaccinia Virus protein VP39 37 146 IPR029063 -
Trre13g00527 146 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 146 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00527 Trre-Chr13 4081531 4082701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00527 43 141 Monolignol Biosynthesis Gene Families AT5G54160 41.414 4.53e-20 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00527 - K22588 gmx:100818947 138.658