Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00514 ATGGCCGCCCCCGCCGGAATGGACATGTCACTAGACGAACTCATCAACAAATCCACCGCTCACCGCAAAAACAACGCCGGTCACGGACCAAACCGCCACCTCGCTGTTCGTAATCCGGTCAGAATGATGCCGTACTCCGTTTCTCAGCCTCAGGTGGCGAGAGAAGAATGGCGAAGAAGTAGCGTTGATGTTTCAGAAATGGTTTTGGATGATGGTGCTGTTCAACCTAAATCTATCACCAAACTCTATCTTTCTAACTTGGATGAAAGGGTTTCCAATGAAGACATTCATCTGTTGTTCTCAGAAGACGGTGAGTTGGAAAAATATTCCATTCACTATGATCAGTTTGGGAGATCAAAAGGAACAGCAGAAGTTGTCTTTACAAGGCAGTCTGATGCTTTAGCAGCCCTCAAGAGGTACAACAATATGAGGCTTGATGGAAAGGTATTGCAAATTGAGCTTGTTGGAACTAGTTTGGTTACTACTGCTGCCGCCACAACACCTAGTGATCAAAGTAGCATACTAGGAAGACCAAATGATGGCTTTGTAAGGTGTGGGATTCCGATTGCTGGTCTTGTGAACTCTGGAACAAGTTTGGTTACTCATGTTGATATGCCTCCTGCTCTTGGTCGAAGTAGCTTATTGGGAAGACCAAGTGATGTCTTTGTAAGGGGAGAAAGAAAGATTAATAACTTTGCATATGGCCATCTTCCAAGAGCGAAGGTCCATACACAAAAGGCGTCTTTTAAAGATACTGGCCATGGCTTTGAGAGGTATCGCCGCCGTGTGGAAGCAAAACGCCGTGTTCCAAGGGTGTCCGCTAAGGATCTTGATGAAGACTTGGAGAAGTATCGCTCAGAGGCTAACAAGATATGCAACATTAAATGA 888 0.4538 MAAPAGMDMSLDELINKSTAHRKNNAGHGPNRHLAVRNPVRMMPYSVSQPQVAREEWRRSSVDVSEMVLDDGAVQPKSITKLYLSNLDERVSNEDIHLLFSEDGELEKYSIHYDQFGRSKGTAEVVFTRQSDALAALKRYNNMRLDGKVLQIELVGTSLVTTAAATTPSDQSSILGRPNDGFVRCGIPIAGLVNSGTSLVTHVDMPPALGRSSLLGRPSDVFVRGERKINNFAYGHLPRAKVHTQKASFKDTGHGFERYRRRVEAKRRVPRVSAKDLDEDLEKYRSEANKICNIK 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00514 295 Gene3D - 72 156 IPR012677 -
Trre13g00514 295 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 7 285 - -
Trre13g00514 295 SUPERFAMILY RNA-binding domain, RBD 35 154 IPR035979 GO:0003676
Trre13g00514 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 157 IPR000504 GO:0003723
Trre13g00514 295 SMART rrm1_1 81 153 IPR000504 GO:0003723
Trre13g00514 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 150 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00514 Trre-Chr13 4006573 4009403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00514 82 155 Eukaryotic Initiation Factors Gene Family AT2G23350 35.135 8.08e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00514 K12881 - gmx:100785926 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00514 13 4006573 4009403 Trre13g00514 13 4006573 4009403 ECH