Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00502 ATGGAGTTGCAGAATGATCAGCATTGGAATGTTGAAATGATGCACGTGAAGAAGGTGAAAAAGGTGATGACTGATGAACAAATTGAAACACTTCAGAAACAAATCGCTGCTTATGGAACTATTTGTGAACAACTTGTTGAAATGCATAAAACTCACTCTTCTAACAAACTTCTTAATGGGGATAGGCTGGGAGGTATGTATTTTGACCCAATGATCACCAAAATAGGTTCGAGGCAGCGTTGGACACCAACCCGTTTGCAGCTTCACACTCTAGAGCGAATATTTGATGCTGAAACGGGGACTCCAAGCAAGGAAACCATAAAGGAGATAACCGCTAATTTAACCAAGCATGGGCCGATTTCTGAGACCAATGTATATAATTGGTTTCAGAATAGGCGTGCTAGGTCAAGGAGAAAGCATCAGAATTTGACGCCCACTAGTGTTAATACTGACGCAGAAGTTGAGACCAATGTTGATTCTAATGATAAGAATACCAAACCGGATGAGTTTGTTGTGTCTCAGCCTGCTGAAAATTTGTGCCGCAAAAACTCTCAGGTGCCCTCTTGCTGGCAGTACTTAACTCCAGAATTAGACAGTTTGGAATCCTCTAAAAACTTTGATCATGAGGCTGCTATCGATGGGAGCAACGATTATCTTGTTGAAAATTTGGACGCACCTGAGAACAAGAACATCGAAGGTTAA 702 0.4145 MELQNDQHWNVEMMHVKKVKKVMTDEQIETLQKQIAAYGTICEQLVEMHKTHSSNKLLNGDRLGGMYFDPMITKIGSRQRWTPTRLQLHTLERIFDAETGTPSKETIKEITANLTKHGPISETNVYNWFQNRRARSRRKHQNLTPTSVNTDAEVETNVDSNDKNTKPDEFVVSQPAENLCRKNSQVPSCWQYLTPELDSLESSKNFDHEAAIDGSNDYLVENLDAPENKNIEG 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00502 233 CDD homeodomain 78 140 IPR001356 GO:0003677
Trre13g00502 233 MobiDBLite consensus disorder prediction 135 168 - -
Trre13g00502 233 ProSiteProfiles 'Homeobox' domain profile. 74 139 IPR001356 GO:0003677
Trre13g00502 233 SMART HOX_1 76 143 IPR001356 GO:0003677
Trre13g00502 233 MobiDBLite consensus disorder prediction 141 155 - -
Trre13g00502 233 SUPERFAMILY Homeodomain-like 71 142 IPR009057 -
Trre13g00502 233 PANTHER WUSCHEL-RELATED HOMEOBOX 13 10 209 IPR044559 GO:0003700
Trre13g00502 233 Pfam Homeodomain 78 138 IPR001356 GO:0003677
Trre13g00502 233 Gene3D - 79 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00502 Trre-Chr13 3933128 3934778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00502 21 178 Wox Gene Family AT4G35550 57.317 2.76e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre13g00502 Homeodomain 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00502 - - tpra:123891516 316.235