Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00500 ATGCCCCGGGAAGCTGGTTGCTTAGCTGAAGAAAATATTGGCTATGAGAATTCTTCAAGAATCGAGCAAAAGCGAAGTCATCAATGGCTTATGGATACATGTGAACCAGGAATATTCAGCAGCAAGAAACAAGCAGTTGAAGCTGTTAGTGACAGACCAGTTCCAGCAGTGAATGTTTCGCAATGGGACACGGGTTTGGGATTTCAGTCACTGACAGGACAATTTTCTGATCCTCTCTTTGGATCTGATCTTATACGGTCTGTTAATTCAGTCGATAAAAACACACCGTCAGTTGGAGGTGGAAATCTGAATATAGGAATAAAGGAATTTGGTAATCAGTATGGTATTGATCCATCTGCCGGACTGTCAATATCTTCTTCATGTCTGAATTTTGGCGGTATCAGGAAAGTTAAAGTTAATCAAGTCAGAGATTCTGACCATGGCATGCCAGCTGCATCAATAGGGCACTCCTATAGTATGTCTGATGGTTCTGATTACAATAAGAATGACAGAAATATTACATCGGGCTCAACTTATAACAATGGAAGTGACAATACCGTTGCTATAGGGATAAACAAGCCTGATGAAAATCTCTTTTCAACGGGTCACATCTTCAATAAAGGGGAAAAGAGTTTTTTAGTGATGGGTCACAATTATGGCAGGGGAGATGAAAGTGTTTTACCAATTAATCGGCCGTTGGATAGGGGAGATGGAAATTTCGTAACAATGGGTCAGACATATGGAAAGGATGATGGCAATTTGATATCTCAGGGAACGTCATATTCCAAGGGGAATGGGAGCTTTACATCAATGGGTCCAACCTATGGTAAATCAGGAGAAGCTTTCACAACTGTTCCATCGTTCGACGCCGGAAACTCTAGCTCTTTTGGAGGTTTTCATGTTGATCCTGAACCGATTCCCTCTGGTGGAATCATTAATAGTTCCAATCCATTAATAAGCAACCAGAACTCGGCTCAAGGTGTGGATAGCCAGAAGGATCTGACTGAATCAAACCCTGTTCCGCTTGTAAATATCACTCAAAAACATAACGCTAAAAATGATACTGTTGTTAAGAACATAGAGCCAAAGCCAAATCCGACTAAGAAGACTTCTAACAAATTTCCTACAAATGTCAAAAGTTTGTTGTCAACCGGTATTTTTGATGGCATTCCGATAAAATATTGTACATGGTCAAGGGAGAGATATCTTCAAGGAGTCATAAAAGGAACTGGTTACTTGTGTTCATGTGATGTCTGCAAGGGGCAAAAGGCTCTTAATGCATATGAATTCGAGCGCCATGCCGGGGGCAAGTCAAAACACCCTAACAATCACATTTTCTTTGAGAATGGAAAATCAATATATGGTGTTGTTCAAGAGCTGCAAAACAGTCCTCAGGAGATGCTTTTTGATGCCATTCAAACTGTGGCTGGCACCACCATAAACCAAAGGAACTTCCGTATTTGGAAAGCATCGTACCAAGCTGCTACTCTTGAGCTTCAGCGCATCTATGGAAAGGATGATGACGCAGCCATACCATCTTAA 1542 0.4125 MPREAGCLAEENIGYENSSRIEQKRSHQWLMDTCEPGIFSSKKQAVEAVSDRPVPAVNVSQWDTGLGFQSLTGQFSDPLFGSDLIRSVNSVDKNTPSVGGGNLNIGIKEFGNQYGIDPSAGLSISSSCLNFGGIRKVKVNQVRDSDHGMPAASIGHSYSMSDGSDYNKNDRNITSGSTYNNGSDNTVAIGINKPDENLFSTGHIFNKGEKSFLVMGHNYGRGDESVLPINRPLDRGDGNFVTMGQTYGKDDGNLISQGTSYSKGNGSFTSMGPTYGKSGEAFTTVPSFDAGNSSSFGGFHVDPEPIPSGGIINSSNPLISNQNSAQGVDSQKDLTESNPVPLVNITQKHNAKNDTVVKNIEPKPNPTKKTSNKFPTNVKSLLSTGIFDGIPIKYCTWSRERYLQGVIKGTGYLCSCDVCKGQKALNAYEFERHAGGKSKHPNNHIFFENGKSIYGVVQELQNSPQEMLFDAIQTVAGTTINQRNFRIWKASYQAATLELQRIYGKDDDAAIPS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00500 513 PANTHER AUTOIMMUNE REGULATOR 6 491 - -
Trre13g00500 513 MobiDBLite consensus disorder prediction 148 167 - -
Trre13g00500 513 Pfam Tify domain binding domain 405 460 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00500 Trre-Chr13 3924123 3925975 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00500 368 493 PHD Transcription Factor Family AT3G53680 52.381 4.81e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00500 - - gmx:100782217 682.174