Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00499 ATGAATAAAGGCTTTTGGATGCCCCGGGAAGCTGGTTGCTTAGCTGAAGAAAATATTGGCTATGAGAATTCTTCAAGAATCGAGCAAAAGCGAAGTCATCAATGGCTTATGGATACATGTGAACCAGGAATATTCAGCAGCAAGAAACAAGCAGTTGAAGCTGTTAGTGACAGACCAGTTCCAGCAGTGAATGTTTCGCAATGGGACACGGGTTTGGGATTTCAGTCACTGACAGGACAATTTTCTGATCCTCTCTTTGGATCTGATCTTATACGGTCTGTTAATTCAGTCGATAAAAACACACCGTCAGTTGGAGGTGGAAATCTGAATATAGGAATAAAGGAATTTGGTAATCAGTATGGTATTGATCCATCTGCCGGACTGTCAATATCTTCTTCATGTCTGAATTTTGGCGGTATCAGGAAAGTTAAAGTTAATCAAGTCAGAGATTCTGACCATGGCATGCCAGCTGCATCAATAGGGCACTCCTATAGTATGTCTGATGGTTCTGATTACAATAAGAATGACAGAAATATTACATCGGGCTCAACTTATAACAATGGAAGTGACAATACCGTTGCTATAGGGATAAACAAGCCTGATGAAAATCTCTTTTCAACGGGTCACATCTTCAATAAAGGGGAAAAGAGTTTTTTAGTGATGGGTCACAATTATGGCAGGGGAGATGAAAGTGTTTTACCAATTAATCGGCCGTTGGATAGGGGAGATGGAAATTTCGTAACAATGGGTCAGACATATGGAAAGGATGATGGCAATTTGATATCTCAGGGAACGTCATATTCCAAGGGGAATGGGAGCTTTACATCAATGGGTCCAACCTATGGTAAATCAGGAGAAGCTTTCACAACTGTTCCATCGTTCGACGCCGGAAACTCTAGCTCTTTTGGAGGTTTTCATGTTGATCCTGAACCGATTCCCTCTGGTGGAATCATTAATAGTTCCAATCCATTAATAAGCAACCAGAACTCGGCTCAAGGTGTGGATAGCCAGAAGGATCTGACTGAATCAAACCCTGTTCCGCTTGTAAATATCACTCAAAAACATAACGCTAAAAATGATACTGTTGTTAAGAACATAGAGCCAAAGCCAAATCCGACTAAGAAGACTTCTAACAAATTTCCTACAAATGTCAAAAGTTTGTTGTCAACCGGTATTTTTGATGGCATTCCGATAAAATATTGTACATGGTCAAGGGAGAGATATCTTCAAGGAGTCATAAAAGGAACTGGTTACTTGTGTTCATGTGATGTCTGCAAGGGGCAAAAGGCTCTTAATGCATATGAATTCGAGCGCCATGCCGGGGGCAAGTCAAAACACCCTAACAATCACATTTTCTTTGAGAATGGAAAATCAATATATGGTGTTGTTCAAGAGCTGCAAAACAGTCCTCAGGAGATGCTTTTTGATGCCATTCAAACTGTGGCTGGCACCACCATAAACCAAAGGAACTTCCGTATTTGGAAAGCATCGTACCAAGCTGCTACTCTTGAGCTTCAGCGCATCTATGGAAAGGATGATGACGCAGCCATACCATCTTAA 1560 0.4115 MNKGFWMPREAGCLAEENIGYENSSRIEQKRSHQWLMDTCEPGIFSSKKQAVEAVSDRPVPAVNVSQWDTGLGFQSLTGQFSDPLFGSDLIRSVNSVDKNTPSVGGGNLNIGIKEFGNQYGIDPSAGLSISSSCLNFGGIRKVKVNQVRDSDHGMPAASIGHSYSMSDGSDYNKNDRNITSGSTYNNGSDNTVAIGINKPDENLFSTGHIFNKGEKSFLVMGHNYGRGDESVLPINRPLDRGDGNFVTMGQTYGKDDGNLISQGTSYSKGNGSFTSMGPTYGKSGEAFTTVPSFDAGNSSSFGGFHVDPEPIPSGGIINSSNPLISNQNSAQGVDSQKDLTESNPVPLVNITQKHNAKNDTVVKNIEPKPNPTKKTSNKFPTNVKSLLSTGIFDGIPIKYCTWSRERYLQGVIKGTGYLCSCDVCKGQKALNAYEFERHAGGKSKHPNNHIFFENGKSIYGVVQELQNSPQEMLFDAIQTVAGTTINQRNFRIWKASYQAATLELQRIYGKDDDAAIPS 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00499 519 MobiDBLite consensus disorder prediction 154 173 - -
Trre13g00499 519 PANTHER AUTOIMMUNE REGULATOR 5 497 - -
Trre13g00499 519 Pfam Tify domain binding domain 411 466 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00499 Trre-Chr13 3924123 3926874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00499 374 499 PHD Transcription Factor Family AT3G53680 52.381 5.91e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00499 - - gmx:100782217 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00499 13 3924123 3926874 Trre13g00499 13 3924123 3926874 ECH
Trre1g02695 1 22257212 22259339 Trre13g00499 13 3924123 3926874 ECH