Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00498 ATGAAGAGAGAAAGAGAGATTGATAGCATGACTATGGCAAATTGTTTGATGTTACTTTCTCGTGGAAGTGATCAATTTGAAGCCACGTATTCATCTACTATCACTTCAAATGATCGTGTGTTTGAATGCAAAACATGTAATAGACAATTTTCTTCATTCCAAGCACTTGGTGGCCATAGGGCAAGTCACAAAAAACCAAGGTTGATGGGTGAAAATATTGATGGTCAATTGCTAAATACACCCCCAAAGCCTAAAACACATGAGTGTTCTATTTGTGGATTGGAGTTTGCAATAGGACAAGCTTTAGGTGGACATATGAGGAGACATAGAGCTTCAAATTTGAATGGAAATAATAATATCCACAATTCTAATAATACTATGAGTTGTAGTAGTGGGGGTGACGTTAGTAGTCTTGATTCTTCACAAAAGATGAAAGGTAGAAACAAGAGAGTTTTGGTTTTGGATCTTGATTTGAACTTGACTCCCTTTGAGAATGATTTGGAGATTCTGAAGATTGGAAAGGCAACTGCTAATTTGATTGATTTTTTGCATTGA 555 0.3604 MKREREIDSMTMANCLMLLSRGSDQFEATYSSTITSNDRVFECKTCNRQFSSFQALGGHRASHKKPRLMGENIDGQLLNTPPKPKTHECSICGLEFAIGQALGGHMRRHRASNLNGNNNIHNSNNTMSCSSGGDVSSLDSSQKMKGRNKRVLVLDLDLNLTPFENDLEILKIGKATANLIDFLH 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00498 184 MobiDBLite consensus disorder prediction 115 142 - -
Trre13g00498 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Trre13g00498 184 Gene3D Classic Zinc Finger 38 109 - -
Trre13g00498 184 Pfam C2H2-type zinc finger 40 66 - -
Trre13g00498 184 Pfam C2H2-type zinc finger 87 111 - -
Trre13g00498 184 PANTHER ZINC FINGER PROTEIN ZAT5 7 165 - -
Trre13g00498 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Trre13g00498 184 SUPERFAMILY beta-beta-alpha zinc fingers 39 109 IPR036236 -
Trre13g00498 184 SMART c2h2final6 87 109 IPR013087 -
Trre13g00498 184 SMART c2h2final6 41 63 IPR013087 -
Trre13g00498 184 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Trre13g00498 184 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00498 Trre-Chr13 3919616 3920170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00498 1 181 C2H2 Transcription Factor Family AT2G37430 44.271 5.43e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g00498 zf-C2H2_6 7.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00498 - - gmx:100500371 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00498 13 3919616 3920170 Trre13g00498 13 3919616 3920170 ECH