Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00495 ATGCCAATCTATAGAATTGCAATTGGATCTCCTGGAGAGGCTGGTCAACCTGATGCAATTAGAGCTGCATTTGCTGAATTCTTTTCTATGCTTATTTTTGTTTTTGCTGGTCAAGGCTCTGGCATGGCTTATAGCAAGCTTACAAATAATGGACCTGCAACACCTGCCGGTCTCATAGCTGCATCACTATCTCATGCATTTGGACTATTTGTTGCTGTTTCTGTGGGAGCAAACATCTCTGGTGGTCATGTCAACCCTGCAGTCACATTTGGTGCCTTCATTGGAGGAAACATTACACTTTTGAGAAGTATTTTATATTGGATTGCACAGTTACTTGGTTCAGTTGTTGCTTGCATTCTTCTCAAGTCTGCTACTGGTGGAATGGAGACATCAGCTTTTGCTTTATCTTCAAATGTCTCAGTATGGAATGCACTAGTTTTTGAAATTGTGATGACATTTGGATTGGTATACACAGTTTATGCAACAGCAGTAGATCCAAAGAAAGGGAATATAGGAATTATTGCTCCACTTGCAATTGGAATTATTGTTGGTGCAAATATCTTAGCTGGTGGAGCATTTGATGGTGCTTCAATGAATCCAGCTGTGTCTTTTGGGCCTGCTGTTGTTTGTTGGACATGGACACATCATTGGGTCTATTGGGTTGGCCCATTTATTGGTGCAGCAATTGCAGCTATAATTTATGATAATATCTTCATTGGTGAGGATGGTCATGAATCTCTCAGTGATTTCTAG 753 0.405 MPIYRIAIGSPGEAGQPDAIRAAFAEFFSMLIFVFAGQGSGMAYSKLTNNGPATPAGLIAASLSHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRSILYWIAQLLGSVVACILLKSATGGMETSAFALSSNVSVWNALVFEIVMTFGLVYTVYATAVDPKKGNIGIIAPLAIGIIVGANILAGGAFDGASMNPAVSFGPAVVCWTWTHHWVYWVGPFIGAAIAAIIYDNIFIGEDGHESLSDF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00495 250 FunFam Probable aquaporin TIP1-1 4 249 - -
Trre13g00495 250 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g00495 250 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g00495 250 SUPERFAMILY Aquaporin-like 17 239 IPR023271 -
Trre13g00495 250 PANTHER AQUAPORIN-8 6 246 IPR034294 -
Trre13g00495 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g00495 250 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g00495 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g00495 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g00495 250 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g00495 250 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g00495 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Trre13g00495 250 Gene3D Glycerol uptake facilitator protein. 4 249 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00495 Trre-Chr13 3901064 3902803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00495 1 250 Major Intrinsic Protein MIP AT4G01470 85.317 8.64e-154 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00495 K09873 - gmx:100788583 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00495 13 3901064 3902803 Trre13g00495 13 3901064 3902803 ECH